Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4411 ATGCATCAATATCAAGCTATGAACTCTCCAGCTTCAATTCATGCCCCTTCATTACCATCTTCTTCTTCTTCCTCCTGTTCGCATCGTTCTCCTCCATGCCTCACTCATGCTTCTCGCAATTTCAAGTTTCCCTTGTCGTTGCCACAGCCAATGTTTACTTCCCAAAAGATTTACTGCTGTTCTGGAGCCGATATGGAGGCGTCTGTTAACACTAATCCCATGAAACTTCACATAGAAACCAGATGTTCTCCGCGATGGTTTGAAGCACAACCCTTGATTTCTAACCAATCACTCAACAAAAACTTGTTCTCAGTGCGAGCTTTAGCAACTCCAACAGCTCAAGATGTTTCTGATACAACTCTTATTGGTGATGACAAGACTGGAGTGTTATTACTAAACCTTGGAGGTCCAGAGACTTTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCTGACCCGGATATTATACGATTTCCTACCGTATTTAGTTTTCTTCAAAAGCCATTAGCCCAATTTATATCTGTTGCAAGGGCCCCAAAGAGCAGAGAAGGCTATGCTTCAATTGGTGGGGGGTCTCCTCTTAGACGTATAACTGACGAACAGGCTGAAGAGTTGAGGAAATATCTTTGGGCAAAGAATGTCCCTGCTAAAGTGTATGTTGGCATGCGGTACTGGCATCCATTCACTGAAGAAGCTATTGAACAGATTAAAAGGGATGGAATTACAAAGCTTGTCGTTCTTCCACTTTATCCACAATTTTCCATATCAACCAGTGGCTCAAGCTTACGCCTACTAGAGAATATATTCCGAGAGGATGAGTATCTGGTCAACATGCAGCACACAGTAATACCTTCGTGGTATCAACGTGAAGGGTACATAAAAGCCATGGCAAATTTAATTGAAAAGGAGCTGAAGAGTTTTGACTGCCCCGAGGAGGTCATGATGTTCTTTAGTGCACATGGCGTGCCTCTTGCTTACGTGGAAGAAGCTGGCGATCCATACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAACTTGAGACAAGGAAGATAACTAATGCCAGCATCCTTGCTTATCAGAGTAGAGTTGGACCAGTCGAATGGTTAAGACCCTATACAGACGAAACAATAGTTGAACTTGGAAAAAAGGGAGTGAAAAGTCTGCTGGCTGTTCCAATTAGCTTTGTCAGTGAGCATATTGAAACTCTTGAAGAAATTGATGTTGAGTACAAAGAATTGGCTCTACAATCCGGTATAGAAAAGTGGGGCCGTGTTCCAGCTCTAGGATGTGAACCCAGCTTCATTTCTGATTTGGCAGACGCCGTTATTGAGAGTCTCCCATATGTTGGTGCCATGGCCGTTTCAGACCTTGAAGCACGACAGTCATTGGTTCCCTTGGGAAGTGTAGAAGAGTTATTGGCTACATACGACTCGAGACGTAGGGAGTTGCCACCGCCATTTGTAGTGTGGGAATGGGGTTGGACAAAGAGTTCTGAAACTTGGAATGGAAGAGTAGCTATGCTGGCTTTCCTGCTTCTTATGTTTTTTGAAGTCACTACAGAAGGGAGTTTTCTGCACCAGTGGGGAATATTGCCCTCACTTAGGTGA 1620 0.437 MHQYQAMNSPASIHAPSLPSSSSSSCSHRSPPCLTHASRNFKFPLSLPQPMFTSQKIYCCSGADMEASVNTNPMKLHIETRCSPRWFEAQPLISNQSLNKNLFSVRALATPTAQDVSDTTLIGDDKTGVLLLNLGGPETLEDVQPFLFNLFADPDIIRFPTVFSFLQKPLAQFISVARAPKSREGYASIGGGSPLRRITDEQAEELRKYLWAKNVPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLENIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIEKELKSFDCPEEVMMFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKITNASILAYQSRVGPVEWLRPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDVEYKELALQSGIEKWGRVPALGCEPSFISDLADAVIESLPYVGAMAVSDLEARQSLVPLGSVEELLATYDSRRRELPPPFVVWEWGWTKSSETWNGRVAMLAFLLLMFFEVTTEGSFLHQWGILPSLR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4411 539 SUPERFAMILY Chlorophyll a-b binding protein 494 534 - -
Lja1g4411 539 ProSitePatterns Ferrochelatase signature. 316 337 IPR019772 GO:0004325|GO:0006783
Lja1g4411 539 CDD Ferrochelatase_N 127 289 IPR033659 -
Lja1g4411 539 CDD Ferrochelatase_C 295 433 IPR033644 -
Lja1g4411 539 TIGRFAM hemH: ferrochelatase 125 450 IPR001015 GO:0004325|GO:0006783
Lja1g4411 539 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g4411 539 Gene3D - 126 449 - -
Lja1g4411 539 Pfam Ferrochelatase 126 449 IPR001015 GO:0004325|GO:0006783
Lja1g4411 539 PANTHER FERROCHELATASE 80 460 IPR001015 GO:0004325|GO:0006783
Lja1g4411 539 Hamap Coproporphyrin III ferrochelatase [cpfC]. 125 450 IPR001015 GO:0004325|GO:0006783
Lja1g4411 539 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 80 460 - -
Lja1g4411 539 Gene3D - 288 431 - -
Lja1g4411 539 SUPERFAMILY Chelatase 125 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4411 Lja-Chr1 57238488 57244112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4411 K01772 - gmx:100785669 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4411 1 57238488 57244112 Lja1g4411 1 57238488 57244112 ECH
Lja4g0538 4 4401312 4407297 Lja1g4411 1 57238488 57244112 PCT