Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0536 ATGGCTGAAGTAGAGGAGGCTGCAAAGCAAGTGGTGGTCAGTGATGTTCCACCACAGCCTGAAAAACCTGCAGAGAAAGTTCCAAACCCTGAGCCTGAGGAGGAGGAAGAGAAGAAGGACAATGTTGAGGAAACTGTTACTCTGGGGACCCATCTCTCCAAACACACTGACAGCAGTGACAACAACAACAACAACGGTGATGACAAGAACCCTGAAACAGTGGTGTCCAAGGAAGAAAGCACCAACCTGTCTTCTGACAAAACCCTTGAGAATGAGAACAAAGCACTGCATGAGCTTAAGAATCTCATTCAGGAGGCACTCAACAAGCACGAGTTCTCTACCCCTGCTAAACCACCACCCACCGTAGCTGTAGAAGAAAAGGAAAAACCCCTTGAGAAAGAAGGTTCTGAACCTGTTGCTGAGAAAACAGAAGAGCCAGTTGCAGAGAAAACAGAGGAGCATGTTGCAGAGAAAACAGAGGAAACAGGGGAGAAGAAGGAAGAGGAAAAAGGAGAAGGAGAAGGAGAAGTAGAGAAGAAGGAAGAGGTGGAGGAAGCTGAGGTAGCTTCTGCTGCTGCTCCATCTGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACAGTTGTTGCTGTCTCTTCCTCCTCTGTTTCCTCTGTTTTGGCAGAGCAGCAGGGAGAAACAGAGAAGGTGGCAGAGGCTGAAGCCAAGGATGAAGCTTCGCTAACATTATCTCCACCGGAAGAAGTATCCATCTGGGGGATACCGCTCCTTGCTGACGAGAGGAGCGACCTGATTCTCTTGAAATTTCTGCGCGCCAGAGATTTCAAGGTGAAGGAAGCATTCACCATGATCCAGAACACAATCCGCTGGAGAAAGGAATTTAAAATGGATGAGTTGCTGGAGGAGAAGCTTGGTGATGAGTTGGAGAAGGTGGTGTACATGCAGGGGTTCGACAAGGAAGGTCACCCTGTGTGTTACAACATATATGGAGAATTCCAGGACAAGGAGCTGTACAAGAAGGCCTTTTCTGATGAGGAGAAGAGGCAGAATTTCCTCAGATGGAGAATTCAGTTTCTTGAGAAGAGTATTAGGAAACTGGATTTCAACCCTGGTGGCATATGCACCATTGTTCAGGTCAATGATCTCAAGAATTCACCTGGACCTGGAAAATGGGAACTAAGACAAGCTACCAATCAAGCCCTGCAGTTGTTTCAGGACAATTACCCTGAATTTGTATTCAAACAGGTGTTCATCAATGTGCCATGGTGGTACCTTGCAGTGAATAGGATGATAAGCCCTTTTCTTACCCAGAGAACCAAAAGCAAGTTTGTCTTTGCAGGTCCTTCCAAATCAGTGGAGACCCTTTTGAGATACATAGCTCCAGAGCAACTCCCTGTCAAGTATGGTGGACTAAGCAAAGATGGGGAATTTGAAAATTCTGAAGCTGTTACTGAGATTACAATAAGGCCAGCTGCAAAACATACTGTGGAATTTCCTGTAACTGAGAAATGCTTACTCTCTTGGGAGCTGAGAGTAATAGGATGGGATATAAGCTATGGTGCTGAATTTGTGCCAAGCTCAGAAGGAAGCTACACTGTAATTGTCCAGAAAGATAGAAAGGTTGCATCCTCGGAGGAACCAGTGCTTTTCAACAGTTTCAAAATTGAGGAACCTGGGAAAGTTGTTCTCACCATTAACAACACTAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACTAAGCTTACCCCCTCTGACTGA 1773 0.4591 MAEVEEAAKQVVVSDVPPQPEKPAEKVPNPEPEEEEEKKDNVEETVTLGTHLSKHTDSSDNNNNNGDDKNPETVVSKEESTNLSSDKTLENENKALHELKNLIQEALNKHEFSTPAKPPPTVAVEEKEKPLEKEGSEPVAEKTEEPVAEKTEEHVAEKTEETGEKKEEEKGEGEGEVEKKEEVEEAEVASAAAPSVDDDGAKTVEAIEETVVAVSSSSVSSVLAEQQGETEKVAEAEAKDEASLTLSPPEEVSIWGIPLLADERSDLILLKFLRARDFKVKEAFTMIQNTIRWRKEFKMDELLEEKLGDELEKVVYMQGFDKEGHPVCYNIYGEFQDKELYKKAFSDEEKRQNFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPGKWELRQATNQALQLFQDNYPEFVFKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSVETLLRYIAPEQLPVKYGGLSKDGEFENSEAVTEITIRPAAKHTVEFPVTEKCLLSWELRVIGWDISYGAEFVPSSEGSYTVIVQKDRKVASSEEPVLFNSFKIEEPGKVVLTINNTSSKKKKLLYRLKTKLTPSD* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0536 590 MobiDBLite consensus disorder prediction 1 200 - -
Lja4g0536 590 Coils Coil 89 109 - -
Lja4g0536 590 Gene3D GOLD domain 489 584 - -
Lja4g0536 590 Pfam CRAL/TRIO domain 313 473 IPR001251 -
Lja4g0536 590 Pfam CRAL/TRIO, N-terminal domain 250 289 IPR011074 -
Lja4g0536 590 MobiDBLite consensus disorder prediction 90 105 - -
Lja4g0536 590 ProSiteProfiles GOLD domain profile. 483 584 IPR009038 -
Lja4g0536 590 Gene3D - 226 296 - -
Lja4g0536 590 PANTHER PATELLIN-3 PROTEIN 13 590 - -
Lja4g0536 590 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 484 582 IPR036598 -
Lja4g0536 590 CDD SEC14 310 474 IPR001251 -
Lja4g0536 590 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 304 479 IPR001251 -
Lja4g0536 590 PRINTS Cellular retinaldehyde-binding protein signature 268 290 - -
Lja4g0536 590 PRINTS Cellular retinaldehyde-binding protein signature 431 450 - -
Lja4g0536 590 SUPERFAMILY CRAL/TRIO N-terminal domain 264 305 IPR036273 -
Lja4g0536 590 MobiDBLite consensus disorder prediction 122 187 - -
Lja4g0536 590 Gene3D - 300 488 IPR036865 -
Lja4g0536 590 MobiDBLite consensus disorder prediction 46 89 - -
Lja4g0536 590 SMART sec14_4 309 476 IPR001251 -
Lja4g0536 590 SMART CRAL_TRIO_N_2 265 290 IPR011074 -
Lja4g0536 590 PANTHER PATELLIN-1 13 590 IPR044834 GO:0008289
Lja4g0536 590 SUPERFAMILY CRAL/TRIO domain 314 476 IPR036865 -
Lja4g0536 590 MobiDBLite consensus disorder prediction 26 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0536 Lja-Chr4 4386907 4390243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0536 269 468 Acyl Lipid Metabolism Gene Families AT1G55840 28.230 3.23e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0536 - - gmx:100788197 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0536 4 4386907 4390243 Lja4g0536 4 4386907 4390243 ECH
Lja4g0536 4 4386907 4390243 Lja1g4409 1 57204986 57208220 PCT