Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4409 ATGGCTGAGCAAGTTCCCAACACACTGCCACTTGCGGAGGACCAAGTGGTAGTTACTGATGTCGCCGCCGCCGAACCTGCTGACAAGGAAACACAACAGCCCAAGCCCGAGGAGGAAAAGCCCGTGGAGGCTGAAACTGAGGTTTCTAAGCCCGGTGGTGGTGATGAAGTTCCGGAATCTGGTTCGTTCAAGGAAGAGAGCAACATCGTTGCTGATTTACCTGATGCAGAGAGCAAAGCGCTGCAAGAGTTCAAACTTCTTGTTCAGACCGCGCTCAACAACCATGAATTCTCTGCGCCTGACAATCCGCCGCCGCAAGGGAGAAAAAATTCTGATGGCGCGGAAAACCAGCCAGATAAACCTTCAAAACCACCAGTTGCTGATGTTGCTGGAGAGCCTGCGCCACCACCGGAAGAGGAATCTGATGATGTCAAAGGCAGCGATGATGAACCTTCAAAACCACCACTTGCTGATGTTGGTAAAGCGACGGTGCCACCACTGGAAGAAGAATCTGAGCCCGCCGCCGCCGCGGAAAAAGAAGAAGCAGAGGCTGTTGCAGGAGGAGAATCAGAAGTGAAGGAAACAACAACCAAGGTGGTGGCTGGTTCTGCTGTTGATGATGACGGAGCCAAAACGGTTGAAGCTATTGAAGAAACCGTTGTGGCTGTTGCTGCTGCTGCACCGGAAGAGGAAGCGAAGGTGGTGGAGGAGGAAGCTAAAGCTTCACCGGAGGAGGTCTCGATTTGGGGGATTCCGCTTCTTGCAGATGAAAGAAGCGACGTGATTCTGCTGAAGTTTCTGCGGGCCAGGGATTTTAAGGTGAAGGAGGCGTTTGCCATGATCAAGAGCACGATTCTGTGGAGGAAGGAGTTTGGAATTGATGGATTGCTAGAGGAAGATTTGGGGGATGATTTGGAGAAAGCTGTGTACATGCATGGTTCTGATAAGGAAGGTCACCCTGTGTGTTACAACATCTATGGGGAGTTTCAGGACAAGGAGCTTTACAAGAAAACTTTCTCTGATGAGGAGAAGAGGCAGAAGTTTCTGAGGTGGAGGATTCAGTTCTTGGAGAAGAGTATCAGGAAGCTTGATTTCACTCCTGCTGGTATTTCCACCATTGTTCAGGTCAATGATCTTAAGAATTCTCCTGGACCTGCTAAATGGGAGCTTAGACAAGCAACCAAACAGGCCCTTCAATTGCTTCAGGATAATTACCCTGAATTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTAGCAGTGAACAGGATGATAAGCCCTTTTCTCACACAGAGAACCAAAAGCAAGTTTGTCTTTGCAGGCCCTTCCAAATCAGCTGAGACCCTTCTAAGATACATAGCACCAGAGCAGCTACCAGTCAAGTATGGTGGACTAAGCAAAGATGGTGAATTCGGAGTAAACGATGCTGTGACTGAAATTACAGTGAGGCCAGCTGCAAAGCACACCGTGGAATTTCCGGTTACTGAGAACGGCTTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGATGTGAGCTATGGTGCAGAGTTTGTGCCAAGTGCAGAAGGAAGCTACACTGTGATCATCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAGCCAGTGCTTTGCCAAAACTATAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGGTTGAAGACCAAGCCAACTTCTGACTGA 1752 0.4874 MAEQVPNTLPLAEDQVVVTDVAAAEPADKETQQPKPEEEKPVEAETEVSKPGGGDEVPESGSFKEESNIVADLPDAESKALQEFKLLVQTALNNHEFSAPDNPPPQGRKNSDGAENQPDKPSKPPVADVAGEPAPPPEEESDDVKGSDDEPSKPPLADVGKATVPPLEEESEPAAAAEKEEAEAVAGGESEVKETTTKVVAGSAVDDDGAKTVEAIEETVVAVAAAAPEEEAKVVEEEAKASPEEVSIWGIPLLADERSDVILLKFLRARDFKVKEAFAMIKSTILWRKEFGIDGLLEEDLGDDLEKAVYMHGSDKEGHPVCYNIYGEFQDKELYKKTFSDEEKRQKFLRWRIQFLEKSIRKLDFTPAGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGVNDAVTEITVRPAAKHTVEFPVTENGLLSWELRVIGWDVSYGAEFVPSAEGSYTVIIQKARKVASSEEPVLCQNYKIGEPGKVVLTIDNQSSKKKKLLYRLKTKPTSD* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4409 583 MobiDBLite consensus disorder prediction 138 155 - -
Lja1g4409 583 MobiDBLite consensus disorder prediction 30 52 - -
Lja1g4409 583 MobiDBLite consensus disorder prediction 1 75 - -
Lja1g4409 583 SUPERFAMILY CRAL/TRIO N-terminal domain 258 300 IPR036273 -
Lja1g4409 583 Pfam CRAL/TRIO, N-terminal domain 238 282 IPR011074 -
Lja1g4409 583 Gene3D GOLD domain 483 578 - -
Lja1g4409 583 SMART CRAL_TRIO_N_2 259 284 IPR011074 -
Lja1g4409 583 PANTHER PATELLIN-1 15 583 IPR044834 GO:0008289
Lja1g4409 583 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 298 473 IPR001251 -
Lja1g4409 583 SMART sec14_4 303 470 IPR001251 -
Lja1g4409 583 MobiDBLite consensus disorder prediction 92 200 - -
Lja1g4409 583 PRINTS Cellular retinaldehyde-binding protein signature 425 444 - -
Lja1g4409 583 PRINTS Cellular retinaldehyde-binding protein signature 262 284 - -
Lja1g4409 583 PANTHER PATELLIN-LIKE PROTEIN 15 583 - -
Lja1g4409 583 SUPERFAMILY CRAL/TRIO domain 309 470 IPR036865 -
Lja1g4409 583 Pfam CRAL/TRIO domain 307 467 IPR001251 -
Lja1g4409 583 Gene3D - 227 482 IPR036865 -
Lja1g4409 583 CDD SEC14 304 468 IPR001251 -
Lja1g4409 583 ProSiteProfiles GOLD domain profile. 477 578 IPR009038 -
Lja1g4409 583 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 478 577 IPR036598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4409 Lja-Chr1 57204986 57208220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4409 263 462 Acyl Lipid Metabolism Gene Families AT1G55840 28.241 1.03e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4409 - - gmx:100805585 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4409 1 57204986 57208220 Lja1g4409 1 57204986 57208220 ECH
Lja4g0536 4 4386907 4390243 Lja1g4409 1 57204986 57208220 PCT