Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0518 ATGTCTGGTGCAGGCCAAGCCATGGACCATGTGGGGTTTCCCAAGGCGAAATCCACGGCGGCGCCGACGGCGGCTCAGGGCAAGAAAACCGGTCCGGTTTCGATGGATCATGTTCTTCTGGCTTTGCGTGAGACCAAGGAAGAGAGGGATCTTAGAATTCGGAGTCTCTTCAATTTCTTCGACTCTGCTAACAAAGGCTACTTGGACTATGCTCACATTGAAACGGGTTTATCTGCACTGCAGATACCCCCTGAGTATAAGTATGCTAAGGAACTCTTCAAGGTTTGTGATGCTGATAGGGATGGCAGGGTAGATTACCATGATTTCAGGCGCTATATGGATGACAAGGAGCTTGAGCTTTACCGCATTTTTCAAGCTATTGATGTGGAGCACAGTGGCTGCATTCTCCCTGAAGAGCTTTGGGATGCACTTGTCAAGGCTGGGATTGAAATTGATGAGGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTGCTTTATCCTCATGAAGCCACTATTGAAAATATATATCAGCATTGGGAGAGGGTGTGCCTTGTAGACATCGGAGAACAAGCTGTCATTCCTGAAGGCATCAGCAAGCATGTGCACAGGAGCAGATATTTTATTGCAGGAGGGGTAGCAGGAGCTGCTTCTCGCACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGATCTTACAAGTTCAGACCGGAAATGCTTCTATTATGCCAGCAGTGATGAAGATATGGCAACGAGATGGTTTGTTAGGGTTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTTGCTCCAGAGAGTGCCATCAAGTTTTATGCTTATGAAATGATTAAAAATGTAATCGGAGATGGTCAAGGGAACAAGTCAGATATCGGTACTGCTGGAAGACTTTTTGCAGGTGGTATGGCTGGTGCTATTGCACAGATTGCTATCTATCCACTGGATCTTGTCAAAACTAGGTTACAGACTTGTGTTCCTGAAGGTGGAAGGGTTCCTAAGTTGAGCACACTTACAAGGGATATATGGGTCCATGAGGGACCTCGGGCTTTCTATAGAGGGCTTGTTCCATCTCTTCTTGGTATGATTCCTTATGCAGGCATTGATCTCACTGCCTATGACACCTTGAAAGATATATCCAAAACATATATTCTTTATGACCGCGAAGAACCTGGTGCTCTGATACAACTCGGATGTGGGACAATTTCAGGAGCTCTTGGAGCTACATGTGTCTATCCACTGCAGGTTATTCGTACAAGACTTCAGGCTCAACCTACGAACACATCTAGTGGTGACAGAGGAATGTCTGATGTTTTTTGGAAAACTCTCAAGACTGAAGGCTTTGGAGGTTTCTACAAGGGACTCATTCCAAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACCTATATGGTTTATGAAAGTATGAAGAAGAAACTAGATCTTAAGTAG 1512 0.4484 MSGAGQAMDHVGFPKAKSTAAPTAAQGKKTGPVSMDHVLLALRETKEERDLRIRSLFNFFDSANKGYLDYAHIETGLSALQIPPEYKYAKELFKVCDADRDGRVDYHDFRRYMDDKELELYRIFQAIDVEHSGCILPEELWDALVKAGIEIDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYQHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGVAGAASRTATAPLDRLKVILQVQTGNASIMPAVMKIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMIKNVIGDGQGNKSDIGTAGRLFAGGMAGAIAQIAIYPLDLVKTRLQTCVPEGGRVPKLSTLTRDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDISKTYILYDREEPGALIQLGCGTISGALGATCVYPLQVIRTRLQAQPTNTSSGDRGMSDVFWKTLKTEGFGGFYKGLIPNLLKVVPAASITYMVYESMKKKLDLK* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0518 503 Pfam Mitochondrial carrier protein 311 399 IPR018108 -
Lja4g0518 503 Pfam Mitochondrial carrier protein 413 500 IPR018108 -
Lja4g0518 503 Pfam Mitochondrial carrier protein 221 303 IPR018108 -
Lja4g0518 503 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
Lja4g0518 503 ProSiteProfiles EF-hand calcium-binding domain profile. 120 150 IPR002048 GO:0005509
Lja4g0518 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 411 499 IPR018108 -
Lja4g0518 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 312 399 IPR018108 -
Lja4g0518 503 PRINTS Mitochondrial carrier protein signature 372 390 IPR002067 GO:0055085
Lja4g0518 503 PRINTS Mitochondrial carrier protein signature 276 296 IPR002067 GO:0055085
Lja4g0518 503 PRINTS Mitochondrial carrier protein signature 223 236 IPR002067 GO:0055085
Lja4g0518 503 PRINTS Mitochondrial carrier protein signature 420 442 IPR002067 GO:0055085
Lja4g0518 503 PRINTS Mitochondrial carrier protein signature 327 345 IPR002067 GO:0055085
Lja4g0518 503 PRINTS Mitochondrial carrier protein signature 236 250 IPR002067 GO:0055085
Lja4g0518 503 SUPERFAMILY EF-hand 38 217 IPR011992 -
Lja4g0518 503 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Lja4g0518 503 Gene3D Mitochondrial carrier domain 214 501 IPR023395 -
Lja4g0518 503 Pfam EF-hand domain pair 119 178 IPR002048 GO:0005509
Lja4g0518 503 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 301 IPR018108 -
Lja4g0518 503 Pfam EF-hand domain pair 90 115 IPR002048 GO:0005509
Lja4g0518 503 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lja4g0518 503 PANTHER SOLUTE CARRIER FAMILY 25 60 500 - -
Lja4g0518 503 CDD EFh_PI-PLC 52 181 - -
Lja4g0518 503 SMART efh_1 119 147 IPR002048 GO:0005509
Lja4g0518 503 SMART efh_1 52 80 IPR002048 GO:0005509
Lja4g0518 503 SMART efh_1 88 116 IPR002048 GO:0005509
Lja4g0518 503 SMART efh_1 155 183 IPR002048 GO:0005509
Lja4g0518 503 Gene3D - 51 128 - -
Lja4g0518 503 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Lja4g0518 503 SUPERFAMILY Mitochondrial carrier 217 494 IPR023395 -
Lja4g0518 503 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Lja4g0518 503 Gene3D - 131 206 - -
Lja4g0518 503 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 60 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0518 Lja-Chr4 4257069 4261146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0518 10 502 EF-hand Containing Proteins AT5G51050 75.351 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0518 K14684 - gmx:100791305 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4383 1 56710107 56714102 Lja4g0518 4 4257069 4261146 ECH
Lja4g0518 4 4257069 4261146 Lja4g0518 4 4257069 4261146 ECH