Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4383 ATGGGTAGTGGCAACAACAACAACAAGAACCACACGATGGATCATGTTCTTCTGGCATTGGGGGAAACGAGAGAAGAGAGAGATGTTCGAATCCGCAGCTTGTTCAATTTCTTCGATGGGAAGAACAAGGAGTATTTGGATTATGGCCAGATAGAATCAGGGTTGTCAGCACTGAAAATCCCACCAGAGTACAAGTATGCGAGGGAGCTTTTCAAGGTGTGTGATTCCAATAGTGATGGCAGGGTGACTTATCATGAGTTCCGCAGGTACATGGATGATAAGGAATTGGAGCTTTACCGCATCTTTCAAGCCATTGATGTTGAGCATAGTGGCAGCATTCTCCCTGAAGAGCTCTGGGATGCACTTGTTAAAGCTGGGATTGAAATGGATGATGAGGAGCTTGCTCACTTTGTGGAGCATGTTGATAAGGATAACAATGGGATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTATATCCTCATGAAGCAACAATCGAAAATATATATCACCATTGGGAGAGGGTGTGCCTTGTAGACATCGGAGAGCAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGTGGACCGGAGCAAATATTTTCTTGCCGGAGGGATAGCAGGTGCTACTTCTCGCACTGTAACCGCTCCTCTTGATCGTCTGAAGGTAGTCTTACAAGTTCAGACCGCACGCGCTTCTATTGTGCCGGGAGTGATGAAGATATGGAAGCAAGATGGTTTATTAGGGTTTTACCGCGGTAATGGATTGAATATTGTGAAGGTAGCACCAGAAAGTGCCATCAAATTTTACGCCTTTGAAATGCTGAAAAATGTGATCGGGGATGCTCAAGGAAGCAAGTCAGATATTGGTACTTCTGGGAGGCTTCTTGCGGGTGGAATGGCTGGTGGAATTGCACAGGCTGCTATCTATCCACTGGATCTTATCAAAACTAGGTTACAAACTTGCGCCTCTGAAGGGGGAAGGGCTCCTAACCTGGGAACCCTTACAAAGAATATATGGGTTCACGAAGGACCTCGTGCTTTTTACAGAGGGCTTCTTCCATCTCTGATTGGTATGATTCCTTATGCAGGCATTGATCTCACTGCTTATGATACCTTGAAAGATTTATCCAGGACATATATTCTTAAAGATACTGAACCTGGTCCTCTCGTGCAACTAGGATGTGGGACTATTTCTGGAGCTCTTGGAGCCACTTGTGTCTATCCACTGCAGGTTATTCGTACAAGACTGCAGGCACAACCTTCGAACGATACCAGTGCTTACAAGGGGATGTCTGATGCATTTTGGAAAACATTTCAGCGCGAAGGCTTTAGAGGTTTCTACAAAGGAATCCTTCCAAATCTACTCAAAGTTGTGCCTGCTGCCAGCATTACTTATATGGTCTATGAAAATATGAAAAAGAATCTAGAGCTAGAATAG 1443 0.4449 MGSGNNNNKNHTMDHVLLALGETREERDVRIRSLFNFFDGKNKEYLDYGQIESGLSALKIPPEYKYARELFKVCDSNSDGRVTYHEFRRYMDDKELELYRIFQAIDVEHSGSILPEELWDALVKAGIEMDDEELAHFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVDRSKYFLAGGIAGATSRTVTAPLDRLKVVLQVQTARASIVPGVMKIWKQDGLLGFYRGNGLNIVKVAPESAIKFYAFEMLKNVIGDAQGSKSDIGTSGRLLAGGMAGGIAQAAIYPLDLIKTRLQTCASEGGRAPNLGTLTKNIWVHEGPRAFYRGLLPSLIGMIPYAGIDLTAYDTLKDLSRTYILKDTEPGPLVQLGCGTISGALGATCVYPLQVIRTRLQAQPSNDTSAYKGMSDAFWKTFQREGFRGFYKGILPNLLKVVPAASITYMVYENMKKNLELE* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4383 480 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Lja1g4383 480 Pfam EF hand 69 89 IPR002048 GO:0005509
Lja1g4383 480 SUPERFAMILY Mitochondrial carrier 194 472 IPR023395 -
Lja1g4383 480 PANTHER SOLUTE CARRIER FAMILY 25 45 477 - -
Lja1g4383 480 PRINTS Mitochondrial carrier protein signature 397 419 IPR002067 GO:0055085
Lja1g4383 480 PRINTS Mitochondrial carrier protein signature 214 228 IPR002067 GO:0055085
Lja1g4383 480 PRINTS Mitochondrial carrier protein signature 254 274 IPR002067 GO:0055085
Lja1g4383 480 PRINTS Mitochondrial carrier protein signature 201 214 IPR002067 GO:0055085
Lja1g4383 480 PRINTS Mitochondrial carrier protein signature 350 368 IPR002067 GO:0055085
Lja1g4383 480 PRINTS Mitochondrial carrier protein signature 305 323 IPR002067 GO:0055085
Lja1g4383 480 Pfam Mitochondrial carrier protein 290 378 IPR018108 -
Lja1g4383 480 Pfam Mitochondrial carrier protein 200 281 IPR018108 -
Lja1g4383 480 Pfam Mitochondrial carrier protein 389 477 IPR018108 -
Lja1g4383 480 Gene3D - 7 175 - -
Lja1g4383 480 ProSiteProfiles Solute carrier (Solcar) repeat profile. 388 476 IPR018108 -
Lja1g4383 480 ProSiteProfiles Solute carrier (Solcar) repeat profile. 290 377 IPR018108 -
Lja1g4383 480 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 45 477 - -
Lja1g4383 480 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Lja1g4383 480 SUPERFAMILY EF-hand 20 194 IPR011992 -
Lja1g4383 480 ProSiteProfiles Solute carrier (Solcar) repeat profile. 196 279 IPR018108 -
Lja1g4383 480 Pfam EF-hand domain pair 97 156 IPR002048 GO:0005509
Lja1g4383 480 ProSitePatterns EF-hand calcium-binding domain. 142 154 IPR018247 -
Lja1g4383 480 ProSiteProfiles EF-hand calcium-binding domain profile. 98 128 IPR002048 GO:0005509
Lja1g4383 480 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Lja1g4383 480 Gene3D Mitochondrial carrier domain 192 478 IPR023395 -
Lja1g4383 480 SMART efh_1 133 161 IPR002048 GO:0005509
Lja1g4383 480 SMART efh_1 66 94 IPR002048 GO:0005509
Lja1g4383 480 SMART efh_1 97 125 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4383 Lja-Chr1 56710107 56714102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4383 12 480 EF-hand Containing Proteins AT5G51050 76.008 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4383 K14684 - gmx:100790672 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4383 1 56710107 56714102 Lja4g0518 4 4257069 4261146 ECH
Lja1g4383 1 56710107 56714102 Lja1g4383 1 56710107 56714102 ECH