Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0504 ATGGATGTTGGAGTGAAAGTCGACAATACTGAACTCACCAAAATTCGCCTTGTGAGACGCTTCGTTGAGTCTCAGGATCCCTCTTCTAAGGAAGAAGATGACCTGACGATTAGAAGATTCCTGCGCGCTCGTGATTTAGATGTGGAGAAAGCTTCAGCAATGTTCCTCAAGTACTTGAAATGGAGACGTTCCTTTGTTCCAAATGGTTCTATCTCTCTGTCTCAGATTCCTAATGAACTTGCACATGACAAGGCCTTCACCCAAGGACGTGATAAGCAAGGTCGACCTATATTTGTTGTCTTCGGTCGAAATCATTTTCAAAACAAACATGGTCTAGATGAATTCAAACGATACGTGGTCTATCTTCTTGATAAACTATGTGCAAGCATGCCACCTGGGCAAGAAAAGTTTCTTGGCATAGCAGAACTTAAGGGATGGGGATACTCAAACAGTGATGTACGCGGGTACATCAGTGCTCTGTCCATTTTGCAGGACTACTATCCTGAAAGGTTGGGGAAGTTTTTTATTGTCCATGCACCTTACATATTTATGAAAATTTGGCAGATCATTTACCCTTTCATTGACAATAAAACCAAGAAGAAGATAGTGTTTGTGGATAACAATAAGGTGAAATCAACACTGCTAGAAGATATAGATGAAAGTCAGCTCCCAGAGATTTACGGTGGCAAACTGCCATTAGTATCGGTCCAGGATAGCAATTAG 723 0.4149 MDVGVKVDNTELTKIRLVRRFVESQDPSSKEEDDLTIRRFLRARDLDVEKASAMFLKYLKWRRSFVPNGSISLSQIPNELAHDKAFTQGRDKQGRPIFVVFGRNHFQNKHGLDEFKRYVVYLLDKLCASMPPGQEKFLGIAELKGWGYSNSDVRGYISALSILQDYYPERLGKFFIVHAPYIFMKIWQIIYPFIDNKTKKKIVFVDNNKVKSTLLEDIDESQLPEIYGGKLPLVSVQDSN* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0504 240 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 73 235 IPR001251 -
Lja4g0504 240 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 7 239 - -
Lja4g0504 240 Pfam CRAL/TRIO domain 82 229 IPR001251 -
Lja4g0504 240 SMART CRAL_TRIO_N_2 33 58 IPR011074 -
Lja4g0504 240 CDD SEC14 86 230 IPR001251 -
Lja4g0504 240 PANTHER OS03G0850700 PROTEIN 7 239 - -
Lja4g0504 240 Gene3D - 5 239 IPR036865 -
Lja4g0504 240 SUPERFAMILY CRAL/TRIO N-terminal domain 8 69 IPR036273 -
Lja4g0504 240 SUPERFAMILY CRAL/TRIO domain 78 233 IPR036865 -
Lja4g0504 240 SMART sec14_4 79 232 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0504 Lja-Chr4 4114096 4120442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0504 39 225 Acyl Lipid Metabolism Gene Families AT5G47730 27.586 4.01e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0504 - - mtr:MTR_8g096170 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4374 1 56546881 56549901 Lja4g0504 4 4114096 4120442 ECH
Lja4g0504 4 4114096 4120442 Lja4g0504 4 4114096 4120442 ECH
Lja4g0504 4 4114096 4120442 Lja1g4374 1 56546881 56549901 PCT