Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4374 ATGGAGGCAGTGAGCCCTGAACCAGCTGGGAACTCATCACCATTGGATTCCAAATCAACAACAGGAACAGCACCAATACAAGATGACGGCGCATTGAAAGACAGTACAGAATCTGAGCTCGCTAAAATCCATCTCATGAGAGTTTTTGTTGAAAGCCGTGATCCCTCTTCTAAGGAAGTGGATGATTTGATGATCAGAAGATTCTTGCGCGCTCGTGATTTGGAGGTGGAGAAGGCTTCAGCAATGTTTCTCAAGTACTTGAAATGGAGACGTTCGTTTGTTCCCAATGGTTTTATATCACCTTCAGAGATCACAGAGGATCTTGCACAGGAGAAGATGTACGTGCAAGGAGTTGATAAGAAGGGTCGACCTATAACTGTTGCCTTTGCTGCTAAACATTTTCAAATAAAAAATGGTTTAGACGCATTCAAACGGTATGTGGTCTATGCTCTTGACAAACTATGTTCTAGGATGCCACCAGGACAAGAGAAGTTTCTTGCTATTGCAGATATTAAGGGATGGGGGTATGCGAACAGTGACCTTCGTGGATACCTTGGTGCTCTAACAGTTTTACAGGATTACCACCCGGAAAGATTGGGGAAGTTGTTTATTGTCCACGCACCTTACATATTTATGAAAGTGTGGAAACTTGTTTATCCTTTCATTGACGACAATACCAAGAAGAAGATTGTATTTGTTGACAACAAAAAGCTGAAATCAACATTGTTGGAAGAGATAGATGAGAGTCAGCTTCCTGAGATATATGGAGGCCAATTGCCATTAGTCCCAATCCAGGATTCTTGA 804 0.4216 MEAVSPEPAGNSSPLDSKSTTGTAPIQDDGALKDSTESELAKIHLMRVFVESRDPSSKEVDDLMIRRFLRARDLEVEKASAMFLKYLKWRRSFVPNGFISPSEITEDLAQEKMYVQGVDKKGRPITVAFAAKHFQIKNGLDAFKRYVVYALDKLCSRMPPGQEKFLAIADIKGWGYANSDLRGYLGALTVLQDYHPERLGKLFIVHAPYIFMKVWKLVYPFIDDNTKKKIVFVDNKKLKSTLLEEIDESQLPEIYGGQLPLVPIQDS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4374 267 Gene3D - 17 266 IPR036865 -
Lja1g4374 267 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 31 267 - -
Lja1g4374 267 CDD SEC14 114 258 IPR001251 -
Lja1g4374 267 MobiDBLite consensus disorder prediction 10 26 - -
Lja1g4374 267 PANTHER OS03G0850700 PROTEIN 31 267 - -
Lja1g4374 267 SMART sec14_4 107 260 IPR001251 -
Lja1g4374 267 SMART CRAL_TRIO_N_2 61 86 IPR011074 -
Lja1g4374 267 SUPERFAMILY CRAL/TRIO domain 103 260 IPR036865 -
Lja1g4374 267 SUPERFAMILY CRAL/TRIO N-terminal domain 31 98 IPR036273 -
Lja1g4374 267 Pfam CRAL/TRIO domain 111 257 IPR001251 -
Lja1g4374 267 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 101 263 IPR001251 -
Lja1g4374 267 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4374 Lja-Chr1 56546881 56549901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4374 67 253 Acyl Lipid Metabolism Gene Families AT5G47730 26.601 7.52e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4374 - - gmx:100797666 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4374 1 56546881 56549901 Lja4g0504 4 4114096 4120442 ECH
Lja1g4374 1 56546881 56549901 Lja1g4374 1 56546881 56549901 ECH
Lja4g0504 4 4114096 4120442 Lja1g4374 1 56546881 56549901 PCT