Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0501 ATGGCATCCGAAGAGAAGAAGAAGCGAATGGAAGATCAGCAAAACGGTGTCGTCAATGTCACAACCACAACCGAAGCAGCAGAACACGAGGAAGCATTAGTCGATCTGGTTGAAAGCCGATCCCATGAAGTCGAAGGCCTCCGTTACCATGTCTCCTATTACACCTCTAAGCTTGAGGAGGCTGAGAAGAGGTTTCGAGATGCCGAATCCAAACTGGCTCGCTTTCGAGCCCGAACTAATGCAGGTACTTCACATGAAAAAGTTACAGAGACATTGAATACATCAAATGGTCCAGTTCATGCAAGTGAAGGTTCTTCCAGAAACCACATTGCATATCCTTCCAAACCCCAGCAGCAGCGTCTTGTTCCTGCTGCGAGTTTGAAAATCGCGCAATCCGCTCGTTTGCCAGTGGAAGGAAAGAATGCATCAACCGGTTCCATTTATAGAAGTGAAGGTTCTTACAGAAACCTCATTCAATCCAAGCCCCTGCAGCGTCTTGTTCCTGCTGTGAGATCGAAATTCTCACAATCCACACCGCGTTTGCCAGTAAAATCTGATAAGCCTCAGAGACTTTCTACTGAGCAAAACAATATTGGAATCAAGGGAAGAGAGACAAAAAGAAAATTTGAACAGAAAGAACATGTGGCATTGATTCCTTTGGTATGTAAAAGCTCTTCACCAACCTCAGTGAAAAATCAAAAAAGTTGTTATATATCAACCCAGAACAAGAAGAGATTGCGAAGTATTGCTCTGTATCCTGTGAATGATCAACGTTTTGCGACCAGTGCTTTGGACGGAGTTGTCAACTTGTGGGAAGTTCAGTCTCGGGGACCAGGAGCCTCTCTACTTAGCACTGCTAATTGTCTAACCTTAGAGAGAAGATGGCCAGAAGATATAGCTTGGCATCCAGACGGAAACAGGCTGTTTTCAGTATATAGTGCCGATGGTCAAGATTCTCAAATCTCAGTTACAAATTTTAGAGTACGAGGGGAAGGGAAAGCAGATGTCAAATTCTTAGAGGACAAGCCTCATGTTAAAAGTGTTATCAATAACATTGTTTTCCTGCCATGGGAAAATACCAGCTTTGTAACTGCGGGGACTGATCATGCTGTTATGTTATGGAGTGAGAATGGTGAGAACAAATGGAAACCTAAACCATTGCATATGAATCTTCATTCTTCTTCGGTCATGGGAGTTGCTGGCATGCAGCAGAAGCAGATTGTATTGTCTGCTGGCAAAGACAGGAAAATTATAGGGTACGATGCCCATGTAGGAATACAAGATTTCATGCATCAGGTTGATACTAAATGCTTGAGTGTCCTGCCAAATCCATGCGATTTCAATTTATTCATGGTTCAAACAGGGACTCCAGAGCAACAACTTCGATTATTTGATATAAGATCGAAGAAGACAGAACTTCATGCTTTTGGATGGAAGCAAAGTAGCAGTGAAGCTCAGTCAGCTCTGGTAGACCAGGCTTGGTCTCCCAATGGAATGTACATAACATCTGGTTCAGCTGATCCCGTGATCCACATCTTTGATATTAGATATAATGGTCACAAGCCTTCCCAATCCATACAAGCTCATAAGAAACGAGTCTTCAGAGCCATGTGGCTTCACTCTGTTCCTCTTCTCGTTTCCATATCATCTGATCTCAGCATTGGGCTACACAAGCTTGAGTAG 1683 0.4343 MASEEKKKRMEDQQNGVVNVTTTTEAAEHEEALVDLVESRSHEVEGLRYHVSYYTSKLEEAEKRFRDAESKLARFRARTNAGTSHEKVTETLNTSNGPVHASEGSSRNHIAYPSKPQQQRLVPAASLKIAQSARLPVEGKNASTGSIYRSEGSYRNLIQSKPLQRLVPAVRSKFSQSTPRLPVKSDKPQRLSTEQNNIGIKGRETKRKFEQKEHVALIPLVCKSSSPTSVKNQKSCYISTQNKKRLRSIALYPVNDQRFATSALDGVVNLWEVQSRGPGASLLSTANCLTLERRWPEDIAWHPDGNRLFSVYSADGQDSQISVTNFRVRGEGKADVKFLEDKPHVKSVINNIVFLPWENTSFVTAGTDHAVMLWSENGENKWKPKPLHMNLHSSSVMGVAGMQQKQIVLSAGKDRKIIGYDAHVGIQDFMHQVDTKCLSVLPNPCDFNLFMVQTGTPEQQLRLFDIRSKKTELHAFGWKQSSSEAQSALVDQAWSPNGMYITSGSADPVIHIFDIRYNGHKPSQSIQAHKKRVFRAMWLHSVPLLVSISSDLSIGLHKLE* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0501 560 MobiDBLite consensus disorder prediction 77 106 - -
Lja4g0501 560 SMART WD40_4 519 558 IPR001680 GO:0005515
Lja4g0501 560 SMART WD40_4 469 514 IPR001680 GO:0005515
Lja4g0501 560 SMART WD40_4 383 421 IPR001680 GO:0005515
Lja4g0501 560 SMART WD40_4 284 325 IPR001680 GO:0005515
Lja4g0501 560 SMART WD40_4 232 272 IPR001680 GO:0005515
Lja4g0501 560 SMART WD40_4 335 375 IPR001680 GO:0005515
Lja4g0501 560 Pfam WD domain, G-beta repeat 488 514 IPR001680 GO:0005515
Lja4g0501 560 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 10 559 - -
Lja4g0501 560 Gene3D - 172 429 IPR015943 GO:0005515
Lja4g0501 560 MobiDBLite consensus disorder prediction 1 26 - -
Lja4g0501 560 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 10 559 - -
Lja4g0501 560 SUPERFAMILY WD40 repeat-like 244 557 IPR036322 GO:0005515
Lja4g0501 560 MobiDBLite consensus disorder prediction 82 106 - -
Lja4g0501 560 Coils Coil 51 78 - -
Lja4g0501 560 Gene3D - 430 560 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0501 Lja-Chr4 4095291 4099763 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0501 - - ccaj:109813667 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0501 4 4095291 4099763 Lja4g0501 4 4095291 4099763 ECH
Lja4g0501 4 4095291 4099763 Lja1g4370 1 56486984 56492332 PCT