Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4370 ATGGATGAACAATACGAAAGCACCACCAGCAGGGAGGAACAAGAAGAAGCATTAGTCGCTCTCATCGAACACCGCACCCATGAAGTCAAAAACATCCGCAAACGCATCGCTTATTACCAATCTCAGCTTGAGGAGTCAGAGAAGAGGTTGCATGATTCTGAATCGAAATTGGCTCGCCTTCGCGGTCCGGCCAATGCGGTTTCGTCTAGGAAAAATGATAGGTTGGATAATAATGGGATTAAATCGGTGAAGATGGAGCGGAGGTCGAGCAGTCCTGTTGATAGGAATGAAGGTTCTTCTAAGAACCATCATCAATCTCAATCTAAAACTGAGCTTGTTATTCCTGCGGTGGCTCCGAAAGTTTCGCTACTTACAATGTTGCAAAAGTCTGCTGCAAAAAGTGTGTTGAGTTCCGGTTCGGAAGCTAGTGGAGGAGGGAAAGCTGAGAAGGCTCTTGCTAGAGTTTCTAGTGAGCAGCAGAACACTGAAGTTAAGGAAAGGGCGGCAAAAAGGAAATTTGAGGAGAAAGAACACAAGGAATTGATTCCTATGATATGCAAGAGTTCTTCACTGAGCTTGGTTCACTGTCAATCAAGCAACCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTCTGTGTCCCGTGAATGATCAGCTTTTTGTGACCAGTGCTTTGGATGGAGTGGTCAACATGTGGCAAGTTCAAGCTAAGGGATCAGGAGCCTCTCGTCTTAGCTCTACTGATTGTGTATCTCCAAAGCAAAGGAGATGGCCAGAAGATATAACTTGGCACCCAGAAGGGCACAGCCTATTTTCAGTATACACTGCTGATAGTGGAGACTCTCAAGTATCAGTTACCAATCTGAATAAATCAAAAGGGGCAGAACGTGTAAAATTCTTAGAGGATAAGCCTCATGTTAAGGGAATTATCAATGGTATTGTCTTCATGCCCTGGGAAAACACATGTTTTGTTACTGGCGGAAGTGACCATGCTGTTGTACTTTGGAGTGAGCAGGATGGTGAGAACACATGGAAGCCAAAAGTATTGCACAGAAATCTTCATTCTTCTGCTGTCATGGGAGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTATCTGCTGGTGCAGACAGGAGAATATTTGGGTTTGATGTTCGCGTAGGAAGAGCAGATTTCAAACATCAGGTTGATAGTAAATGCATGAGTGTCCTGCCTAATCCATGTGATTTCAACTTATTCATGGTTCAAACAGGGACTCATGAGAAGCAGCTTCGATTATACGATATTAGACTGAGGCAGACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGATTCTCAGTCAGCTCTGATAAACCAGACTTGGTCTCCAGATGGGCTTTACATAGCATCTGGTTCAGTGGATCCTGTGATTCACATCTTTGATATAAGATATAATTCTCACAAACCTTCGCAATCTATAAGAGCTCATCAGAAACGAGTCTTTAAAGCCATGTGGCTTCAGTCTATTCCTCTTCTCATTTCCATATCATCTGATCTCAACATTGGACTACACAAGATTTACTAG 1578 0.4341 MDEQYESTTSREEQEEALVALIEHRTHEVKNIRKRIAYYQSQLEESEKRLHDSESKLARLRGPANAVSSRKNDRLDNNGIKSVKMERRSSSPVDRNEGSSKNHHQSQSKTELVIPAVAPKVSLLTMLQKSAAKSVLSSGSEASGGGKAEKALARVSSEQQNTEVKERAAKRKFEEKEHKELIPMICKSSSLSLVHCQSSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNMWQVQAKGSGASRLSSTDCVSPKQRRWPEDITWHPEGHSLFSVYTADSGDSQVSVTNLNKSKGAERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVVLWSEQDGENTWKPKVLHRNLHSSAVMGVAGMQQKQIVLSAGADRRIFGFDVRVGRADFKHQVDSKCMSVLPNPCDFNLFMVQTGTHEKQLRLYDIRLRQTELHAFGWKQESSDSQSALINQTWSPDGLYIASGSVDPVIHIFDIRYNSHKPSQSIRAHQKRVFKAMWLQSIPLLISISSDLNIGLHKIY* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4370 525 Pfam WD domain, G-beta repeat 457 479 IPR001680 GO:0005515
Lja1g4370 525 SUPERFAMILY WD40 repeat-like 208 521 IPR036322 GO:0005515
Lja1g4370 525 Gene3D - 409 525 IPR015943 GO:0005515
Lja1g4370 525 Gene3D - 9 408 IPR015943 GO:0005515
Lja1g4370 525 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 524 - -
Lja1g4370 525 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 524 - -
Lja1g4370 525 MobiDBLite consensus disorder prediction 135 168 - -
Lja1g4370 525 MobiDBLite consensus disorder prediction 43 58 - -
Lja1g4370 525 SMART WD40_4 296 339 IPR001680 GO:0005515
Lja1g4370 525 SMART WD40_4 484 523 IPR001680 GO:0005515
Lja1g4370 525 SMART WD40_4 197 236 IPR001680 GO:0005515
Lja1g4370 525 SMART WD40_4 348 386 IPR001680 GO:0005515
Lja1g4370 525 SMART WD40_4 442 479 IPR001680 GO:0005515
Lja1g4370 525 Coils Coil 29 56 - -
Lja1g4370 525 MobiDBLite consensus disorder prediction 74 104 - -
Lja1g4370 525 MobiDBLite consensus disorder prediction 43 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4370 Lja-Chr1 56486984 56492332 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4370 - - gmx:100799587 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4370 1 56486984 56492332 Lja1g4370 1 56486984 56492332 ECH
Lja4g0501 4 4095291 4099763 Lja1g4370 1 56486984 56492332 PCT