Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0480 ATGGCTGAGATTCATGCGGCGGAGGGTCAGCTCAACGGCGCCGGAAACCTAATTCTGAACTCCTTGGAACCCATCGGAACCAAGCGCCAGAGGAGGCCTAGCGTCCGATTAGGCGACATCGGCGGCGACCAACCGCACGAATCCCACCACCGCCGAAGCACCAGCAGCAAGGGGTGGAAGCTCGGCTTCGACCACCGCAAGGAAAAGGATTCCACCGCCGCTAACCCATCATCAGGTAATAAACCCTCCAAGACTCGACCCTTAACCAATTTGACCTCCGTCGCCGACTTCAATGAAACCCTAGACGGCGACGAGAGGGAAGGGAACAACATCGACAGCGTCGCGATTGGTAGCTGGAAGGTGAAAGAGTCCAAGAAGAGGGCCACCAAGAGGGTCAGATCGAGTTGGGTCTCGAGAATCGAGGATGGTGGGGGCGGTGGTGGTGGTGGTGAAGGGGAGGAAAAGTACAGTGGCGGCGATGATGATGTGGATGATGGGTATCGGGAATTTGATATGGAGAATTCGGATTCTCTGTTGAAAGAACAGAGCCCTATTCAATCTATGGAGAATTTGGGGGTTGATGGGCATAGGAGGTCGTTTAAGGGTAGTAGGGATCACCATGATGGGATTGAGCTATCTGGGCCTTCTGATACTGATGCAAGGGATTGGAAGTGTGGAGGGACTAGTGGTGGTGATAGGAATGAGAATGGTGGTGGGAGGGTCAGGTCTGGTGAAGATGGGGTTAGGATTTGGCTCAATGGGTTGGGGTTAGGGCGTTATGCGCCGGTGTTTGAAGTGCATGAGGTTGATGATGAGGTTTTGCCAATGTTGACACTAGAGGATCTCAAAGATATGGGGATTAGTGCTGTTGGATCCAGGAGAAAAATGTACTGTGCTATTCAGAAGCTTGGAAAGGGCTTCTCCTGA 927 0.5286 MAEIHAAEGQLNGAGNLILNSLEPIGTKRQRRPSVRLGDIGGDQPHESHHRRSTSSKGWKLGFDHRKEKDSTAANPSSGNKPSKTRPLTNLTSVADFNETLDGDEREGNNIDSVAIGSWKVKESKKRATKRVRSSWVSRIEDGGGGGGGGEGEEKYSGGDDDVDDGYREFDMENSDSLLKEQSPIQSMENLGVDGHRRSFKGSRDHHDGIELSGPSDTDARDWKCGGTSGGDRNENGGGRVRSGEDGVRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKLGKGFS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0480 308 MobiDBLite consensus disorder prediction 73 97 - -
Lja4g0480 308 SUPERFAMILY SAM/Pointed domain 245 303 IPR013761 -
Lja4g0480 308 MobiDBLite consensus disorder prediction 194 218 - -
Lja4g0480 308 SMART SAM_4 240 306 IPR001660 GO:0005515
Lja4g0480 308 Pfam SAM domain (Sterile alpha motif) 247 303 IPR001660 GO:0005515
Lja4g0480 308 PANTHER - 25 308 - -
Lja4g0480 308 PANTHER SCP160 25 308 - -
Lja4g0480 308 CDD SAM_superfamily 248 302 - -
Lja4g0480 308 Gene3D - 242 303 IPR013761 -
Lja4g0480 308 MobiDBLite consensus disorder prediction 123 169 - -
Lja4g0480 308 MobiDBLite consensus disorder prediction 22 110 - -
Lja4g0480 308 ProSiteProfiles SAM domain profile. 243 306 IPR001660 GO:0005515
Lja4g0480 308 MobiDBLite consensus disorder prediction 29 72 - -
Lja4g0480 308 MobiDBLite consensus disorder prediction 194 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0480 Lja-Chr4 3922934 3924392 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0480 - - aprc:113856178 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4356 1 56253406 56254893 Lja4g0480 4 3922934 3924392 ECH
Lja4g0480 4 3922934 3924392 Lja4g0480 4 3922934 3924392 ECH