Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4356 ATGACGGAGGTTCCGGCACCGGAGGCGCAATTGACCGGCGGAGTAACGGTGGCGCCCAACAAACCCTCCGAACCCACTGCCACTGGATCGAAGCGCCACCGGAGACCCAGCGTCCGATTAGGCGAGATCGGAGACCAACCCAACGATTCCCACCCTCTCCGCCGCACCACCACCACCACCACCACCAAGTCGTCGTGGCGCCTCCCCTTCTCCAACGCCTCAGGTAAACATTCCAAGACTCGACCTCTCACCAACTTGACCGGTTTCGGCGGAACCCTAGAGGGCGACGACGACGACGTCGTTCGCTGGAAACTGAAGGACTCCAAGAAGAGGGGTTCTTCCTCCTCCGCCGCCGCCAAGAGACCCCGATCGAATTGGGTTGCTTCTTCCCAAATCGAGGGAGAGGATTTCGATGCAGAGAGCCCTGTTCTTCATTCAGCGGAGAATTTGGGTGATGACGACGACGACGATGATGATTATAGAGCGACGCTGCAGCATTATCATGAGGAGAATGCTAGGGATAATAAGAATGGGAATGGTGGAGGAGTGAGGCATGGAGAAGATTGGATTCGGATTTGGCTCAATGGGCTAGGCTTAGGTAGATATGCTCCAGTTTTTGAAATCCATGAGATTGATGATGAGGTTTTGCACTTGCTAACTCTTGAGGATCTTAAAGATATGGGGATTAATGCTGTTGGATCAAGAAGGAAATTGTACTGTGCAATTCAGAAGCTTGGCAAGGGTTTCTCCTAA 753 0.5325 MTEVPAPEAQLTGGVTVAPNKPSEPTATGSKRHRRPSVRLGEIGDQPNDSHPLRRTTTTTTTKSSWRLPFSNASGKHSKTRPLTNLTGFGGTLEGDDDDVVRWKLKDSKKRGSSSSAAAKRPRSNWVASSQIEGEDFDAESPVLHSAENLGDDDDDDDDYRATLQHYHEENARDNKNGNGGGVRHGEDWIRIWLNGLGLGRYAPVFEIHEIDDEVLHLLTLEDLKDMGINAVGSRRKLYCAIQKLGKGFS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4356 250 MobiDBLite consensus disorder prediction 50 87 - -
Lja1g4356 250 MobiDBLite consensus disorder prediction 95 114 - -
Lja1g4356 250 Gene3D - 185 245 IPR013761 -
Lja1g4356 250 PANTHER PROTEIN BICAUDAL C HOMOLOG 1-A-LIKE 141 250 - -
Lja1g4356 250 PANTHER PROTEIN BICAUDAL C HOMOLOG 1-A-LIKE 7 156 - -
Lja1g4356 250 SUPERFAMILY SAM/Pointed domain 187 245 IPR013761 -
Lja1g4356 250 SMART SAM_4 182 248 IPR001660 GO:0005515
Lja1g4356 250 ProSiteProfiles SAM domain profile. 193 248 IPR001660 GO:0005515
Lja1g4356 250 Pfam SAM domain (Sterile alpha motif) 189 245 IPR001660 GO:0005515
Lja1g4356 250 MobiDBLite consensus disorder prediction 115 131 - -
Lja1g4356 250 MobiDBLite consensus disorder prediction 1 141 - -
Lja1g4356 250 CDD SAM_superfamily 193 244 - -
Lja1g4356 250 PANTHER SCP160 141 250 - -
Lja1g4356 250 PANTHER SCP160 7 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4356 Lja-Chr1 56253406 56254893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4356 - - mtr:MTR_3g498865 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4356 1 56253406 56254893 Lja4g0480 4 3922934 3924392 ECH
Lja1g4356 1 56253406 56254893 Lja1g4356 1 56253406 56254893 ECH