Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0453 ATGTGTAGCTTTGACATTAAAGCCATTCAAATCGGCTTCAAGTTCTCCTATCCCATCACATTACCTTTTTTCACCAAGCTACGTACACAACGTTCCTTCTCTATCTCTCTTTCTCTCCCACGGGCTGGTCAACGGGAATCCCCTTCTCCGATCACATTCCCGACCACCCCTGCCCCCGTTCTTCCAAACCCAATCAACTTGTCTCATTTTCATAGCTACTCTTACACATCATTACAATTTTTTTGGTGTTATAAGGAGAAAATGTCAAGTCAAGGTGGTTCTTCTCGAATGAGCAATTCATTGTCGGATAGCCCACGGAAGAAGAAGGTCACTGAGTTTACAACGCTTGACCTTGCCGCTCGTAAATCATTTACGCCTATGCGCACGGGAGAGAGAACAGTGAAATCATTGCGGCTCTCAAAGGCATTAACAATACCTGAGACAACAAATGTTTATGAAGCATGTCGCCGGATGGCTTCTCGCAGAGTAGATGCTTTATTACTAACTGATTCTAATGCTTTGCTTTGTGGGATCCTCACAGATAAGGACATAGCGACAAGAGTTACTGCTCGTGAGATTAATCTTGAAGAGACACCAGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTACTGACACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTTCAAGGAAAATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTGTTGCCTTACTTGACATAGCAAAGTGTTTATATGATGCCATTGCTCGAATGGAAAGGGCAGCTGAGAAAGGAAAGGCAATTGCAGCAGCTGTTGAAGGTATCGAAAAACACTTGGGAACATCTGCTACTGGTTCCAATTCATCATTCATTGAGACTCTTCGGGAGAGGATTTTCAAGCCATCATTGTCTACAATAATTCCTGAGAATTCAAAGGTTGCAACTGTTTCACCATCAGACACTATTTTGACAGCAACAAATAAGATGCTTGAATTCCATGTGAATTCTGCTATTGTGACAGTTGATGACAAAACTTGTGGTATCCTTACTTCAAGAGATATCTTGATGCGGGTAGTGGCACATAAGCTTCCTCCATCGTCAACTCTTGTTGAGAAGGTCATGACTCCAAATCCAGAATGTGCTACACTTGATACACCAATTGTTGATGCACTTCACACTATGCATGATGGAAAGTTTTTGCATCTTCCTGTGGTTGATAGAGATGGCATTGTTGTTGCTATGGTTGATGTGATCCATATTACTCATGCTGCTGTGGCGACAGCCAGTAAGGTTGGAAATAGTGCAAATATGAACAATGAAGCTACTAGCTCCATGATACAAAAATTTTGGGATTCTGCGATGTCCTTGACTCCGAATGACGATGAAGAAGATTCACAAAGTGACATTTCCACAAAAATGATTTCTGAGGGAGGAGAAACAGGGAGATCTATGTCTTATCTTGCATCAAGCACAAATAGCGCATTTTCCTTCAAAATACAAGATAACAGGGGAAGGTTACATAGATTCACATGTGATACACGAAGCTTAACAGAAGTTATAGCTTCCATTATTCAAAGAGTCGGTGCTGAGATTAACCCCGATAATCTACCCCAAATAATGTACGAAGATGAAGAACATGATAGAGTTGTACTAGCTTCTGATGGTGATCTTGCTGCAGCTGTGGAACATGCAAGGACAGCTGGTTTGAAGGGATTGAGGTTGCACTTAGACTACTCAGGAACACGTGATTATGGAACTGATACAACATTAAGAAGTTTGGAATATGCTAACTCAGAAGTATGGGCCTCAGCATATAGTGTTGTTACTGCTGGAGCTGCAATTATTGCCGGCATAGGCCTTTTGGCTTTGTTGAGACAAAGATAA 1881 0.4184 MCSFDIKAIQIGFKFSYPITLPFFTKLRTQRSFSISLSLPRAGQRESPSPITFPTTPAPVLPNPINLSHFHSYSYTSLQFFWCYKEKMSSQGGSSRMSNSLSDSPRKKKVTEFTTLDLAARKSFTPMRTGERTVKSLRLSKALTIPETTNVYEACRRMASRRVDALLLTDSNALLCGILTDKDIATRVTAREINLEETPVSKVMTRNPVFVLTDTLAVEALQKMVQGKFRHLPVVENGEVVALLDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHLGTSATGSNSSFIETLRERIFKPSLSTIIPENSKVATVSPSDTILTATNKMLEFHVNSAIVTVDDKTCGILTSRDILMRVVAHKLPPSSTLVEKVMTPNPECATLDTPIVDALHTMHDGKFLHLPVVDRDGIVVAMVDVIHITHAAVATASKVGNSANMNNEATSSMIQKFWDSAMSLTPNDDEEDSQSDISTKMISEGGETGRSMSYLASSTNSAFSFKIQDNRGRLHRFTCDTRSLTEVIASIIQRVGAEINPDNLPQIMYEDEEHDRVVLASDGDLAAAVEHARTAGLKGLRLHLDYSGTRDYGTDTTLRSLEYANSEVWASAYSVVTAGAAIIAGIGLLALLRQR* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0453 626 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 113 614 IPR034896 -
Lja4g0453 626 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 113 614 - -
Lja4g0453 626 Gene3D - 119 269 IPR046342 -
Lja4g0453 626 ProSiteProfiles PB1 domain profile. 491 578 IPR000270 GO:0005515
Lja4g0453 626 ProSiteProfiles CBS domain profile. 373 430 IPR000644 -
Lja4g0453 626 CDD PB1_MUG70 494 578 - -
Lja4g0453 626 Gene3D - 375 460 IPR046342 -
Lja4g0453 626 ProSiteProfiles CBS domain profile. 305 365 IPR000644 -
Lja4g0453 626 ProSiteProfiles CBS domain profile. 204 262 IPR000644 -
Lja4g0453 626 SUPERFAMILY CBS-domain pair 310 422 IPR046342 -
Lja4g0453 626 Gene3D - 311 374 - -
Lja4g0453 626 Pfam PB1 domain 494 576 IPR000270 GO:0005515
Lja4g0453 626 Pfam CBS domain 309 356 IPR000644 -
Lja4g0453 626 Pfam CBS domain 369 421 IPR000644 -
Lja4g0453 626 Pfam CBS domain 140 186 IPR000644 -
Lja4g0453 626 Pfam CBS domain 200 244 IPR000644 -
Lja4g0453 626 SUPERFAMILY CAD & PB1 domains 486 582 - -
Lja4g0453 626 SMART cbs_1 376 424 IPR000644 -
Lja4g0453 626 SMART cbs_1 141 189 IPR000644 -
Lja4g0453 626 SMART cbs_1 207 251 IPR000644 -
Lja4g0453 626 SMART cbs_1 311 358 IPR000644 -
Lja4g0453 626 ProSiteProfiles CBS domain profile. 138 197 IPR000644 -
Lja4g0453 626 SUPERFAMILY CBS-domain pair 131 248 IPR046342 -
Lja4g0453 626 CDD CBS_pair_MUG70_1 139 255 - -
Lja4g0453 626 CDD CBS_pair_MUG70_2 309 425 - -
Lja4g0453 626 SMART PB1_new 493 578 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0453 Lja-Chr4 3691096 3694815 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0453 - - gmx:100783514 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4323 1 55769463 55778923 Lja4g0453 4 3691096 3694815 PCT