Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4323 ATGGCAAGTCAAGGTGGTGGTTCCTCTCGAAGGAGTATTTCATCTTCCAGGAGAGCCTCTGAGTCTGCAGCTTCCCTATCCACTGCTCGAAAATCGCTTTCCTCTTTGCGTCCACTGGGATTTACTGGAGAGCGGACAGTGAAATCATTGAGACTTACAAAGGCTCTGACTGTGCCTGAAACAACAACTGTCTATGAAGCTTGCCGTCGGATGGCTTCCCGTAGAGTGGATGCTCTATTACTAACAGATTCTAATGCTTTGCTATCTGGAATCCTCACGGACAAGGATATAGCAACAAGAGCTATTGCCCAAGAGATTAATCTTGAGAACACGCCTGTTTCCACGGTTATGACAAGGAATCCAGTATTTGTCCTTTCCGAAACTCTGGCTGTAGAAGCCCTGCAAAAGATGGTGCTAGGGAAATTCAGGCATCTACCTGTGGTGGAGAATGGAGAAGTTTTAGCTTTACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCTGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGGAACATCTGACTCCAATTCATCGTTCATTGAGACTATCCGGGACCAGATATTCAAGCCATCATTGTCCACAATCGTCCCCGAGAATTCAAAGATTGCAACAGTTTCGCCTACAGACTCAGTTTTGACAACAACGAAAAAGATGGTTGAACTTCGTGCAAGTTGTGCTGTTGTGACGGTTGATGGCAAACCTCGTGGCATCTTTACTTCAAAGGATGTCTTGATGCGGGTGATTGCGCAAAATCTCCCTCCAGCGTCAACTCCTGTTGAAAAGGTCATGACTCCAAATCCAGAATGTGCATTTATTGATGTTCCAATTGTTGATGCACTTCACACTATGCATGATGGAAAGTTTTTGCATCTTCCTGTGATTGATAGAGATGGCATTGTAGTTGCTGTGGTCGATGTGATTCATGTCACTCATGCCGCTGTGGCAACAGTAAGCCAGGTTGGAAATAATGAAGCTGCCACCTCCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCTTAACTCCAAATGATGATGATGACGAAACACGAAGTGAAAGTTCCTTGAAATTGGCTTCTGAGGGCGGTGAAACGGGGAGAATCGGTCCTTATCTTTCGTCAAGCATGCCCAATACATTTTCCTTCAAACTACAAGATAAGAAGGGTAGAATGCATAGATTCACATGTGATACCCGGAGCATGACAGAGGTTATAACTTCAATCCTGCAAAGACTTGGTGATGATATTGACCCTAACAACCTGCCTCATATTCTGTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCTGCAGCCGTGGACCATGCAAGGATGGCTGGTTTGAAGGGATTGAAATTGCATTTAGACTACGAAGGAACACGTGGTTATCAGAAAGGTTCTGATTCGGGTAGTTTGGAGCTTGCTACTTCAAATGCGTGGACCTCGGCATATAGCAGCGTTGCTGCTGGAGCTGCATTTGTTGCTGGCTTAGGCATATTAACATACTTGAAGCGATATTAA 1599 0.4465 MASQGGGSSRRSISSSRRASESAASLSTARKSLSSLRPLGFTGERTVKSLRLTKALTVPETTTVYEACRRMASRRVDALLLTDSNALLSGILTDKDIATRAIAQEINLENTPVSTVMTRNPVFVLSETLAVEALQKMVLGKFRHLPVVENGEVLALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSDSNSSFIETIRDQIFKPSLSTIVPENSKIATVSPTDSVLTTTKKMVELRASCAVVTVDGKPRGIFTSKDVLMRVIAQNLPPASTPVEKVMTPNPECAFIDVPIVDALHTMHDGKFLHLPVIDRDGIVVAVVDVIHVTHAAVATVSQVGNNEAATSLMQRFWDSAMALTPNDDDDETRSESSLKLASEGGETGRIGPYLSSSMPNTFSFKLQDKKGRMHRFTCDTRSMTEVITSILQRLGDDIDPNNLPHILYEDEDHDKVVLASDSDLAAAVDHARMAGLKGLKLHLDYEGTRGYQKGSDSGSLELATSNAWTSAYSSVAAGAAFVAGLGILTYLKRY* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4323 532 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 22 520 - -
Lja1g4323 532 SUPERFAMILY CBS-domain pair 44 160 IPR046342 -
Lja1g4323 532 ProSiteProfiles CBS domain profile. 117 175 IPR000644 -
Lja1g4323 532 ProSiteProfiles CBS domain profile. 284 345 IPR000644 -
Lja1g4323 532 MobiDBLite consensus disorder prediction 361 392 - -
Lja1g4323 532 CDD PB1_MUG70 400 483 - -
Lja1g4323 532 ProSiteProfiles CBS domain profile. 216 275 IPR000644 -
Lja1g4323 532 Gene3D - 194 346 IPR046342 -
Lja1g4323 532 Gene3D - 31 182 IPR046342 -
Lja1g4323 532 SMART PB1_new 399 484 IPR000270 GO:0005515
Lja1g4323 532 ProSiteProfiles CBS domain profile. 51 108 IPR000644 -
Lja1g4323 532 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 22 520 - -
Lja1g4323 532 SUPERFAMILY CBS-domain pair 222 334 IPR046342 -
Lja1g4323 532 CDD CBS_pair_MUG70_1 52 168 - -
Lja1g4323 532 Pfam PB1 domain 399 482 IPR000270 GO:0005515
Lja1g4323 532 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g4323 532 SUPERFAMILY CAD & PB1 domains 391 486 - -
Lja1g4323 532 ProSiteProfiles PB1 domain profile. 397 484 IPR000270 GO:0005515
Lja1g4323 532 SMART cbs_1 287 335 IPR000644 -
Lja1g4323 532 SMART cbs_1 120 164 IPR000644 -
Lja1g4323 532 SMART cbs_1 54 102 IPR000644 -
Lja1g4323 532 SMART cbs_1 222 269 IPR000644 -
Lja1g4323 532 Pfam CBS domain 113 156 IPR000644 -
Lja1g4323 532 Pfam CBS domain 52 98 IPR000644 -
Lja1g4323 532 Pfam CBS domain 220 266 IPR000644 -
Lja1g4323 532 Pfam CBS domain 280 330 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4323 Lja-Chr1 55769463 55778923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4323 - - gmx:100785816 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4323 1 55769463 55778923 Lja4g0453 4 3691096 3694815 PCT