Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0162 ATGCCTCTCATTCTCAACAACAACTCATCCTTTATTCTCATGAACCTTGCCTTCACAATTCTGATCTTCTCCCTTAATTTTCTTCCTCATGATGCTGCTAACATTACTGCAGCAACAACAACTTCCCCTGAATTCTCCACCTCTGTTCTCAACGTCACAACAGCACTCAACCAAGTCCACCATGTCCTCTCCCTTAAACCCTCTTTCCACCTCCACCAAAACCATGAACAACAACAACAACAAACGCAACACACCCTATCTCCTTCTTCCTCCTCTTCCTTCTCATTCCAATTGCACCCCAGAGAATCTCTCTTCAATGCCCATCACCACAACTACCGCAGCTTAGTCCTCACTCGGCTCAGACGTGACTCAGCCCGTGTCAGCTGGATCACCTCCCATCTAAACAAATCGAACCTCCGACCCGAACACCTATCAGCACCGGTGACCTCCGGCGTCTCACAGGGAACCGGCGAGTACTTTGCCAGAATCGGAGTAGGCCAACCCACGCAACACTTCTACATAGTTCCCGACACAGGAAGCGACATCAACTGGATCCAGTGCAAGCCCTGCAACCAATGCTACAAACAATCCGACCCGATTTTCGACCCGTCTACATCATCTTCCTACGCTCTCGTCCCCTGCAAGGCAAAACAGTGTAAGGACTCTGAATTGACGGGTTGTTATAAGAACGGGTGCGACGGGGTTCTCGTGACGGAAACGTTGTCGCTGGGAAAGAACGGGTCGGTCAAACGGGTCCCGATAGGTTGCGGGCACTTGAACCATGGCACGTTCGCCGGTGCGGCGGGGATACTCGGATTGGGTCGTGGGGCTTTGTCTTTCCAGGCCCATATCAAAGCGTCGTCGTTTTCGTATTGCTTGGTGTACCGCGACACGAACAAATCGTCGACGCTTGAGTTCAACTCGCCCCGACCCGGAGACTCAGTGACTGCTCCGTTGCTGAGTAACCCGAAGCTTAAAACGTTCTACTACGTAGGGGTTACCGGAGTTAGCGTCGGAGGGAGGAGGGTCTCTATTCCGTCGTCGACGTTCGCTATTAAACCGTCGGGGATGGGAGGAATCATCGTGGACTCGGGCACCACCGTGACTCGGTTGCCGACTCCGGCGTACAACGCGATGCGCGACGCGTTCGTGGAGTTGACTCGGCACTTGCGACGCGCCAAGGGATTCTTGATACTAGACACGTGCTATGATTTTTCATCGGTGACTGTGGCGACGGTGCCTACGGTGTCGTTTGAGTTGAGCGGTGGCGGGTCGTGGAGGTTGCCAGTGTTGGGGTATCTGATTCCGGTGGATGATAAGGGAACTTTCTGCTTTGCTTTCGCCCCATCTGTGGAGCCGGTATCGATCATAGGGAACGTGCAACAGCAAGGGACACGTGTCAGCTTTGATCTTGTGAATTCTGTTATTGGTTTCTCTACTGATAAGTGTAGCTAG 1455 0.5271 MPLILNNNSSFILMNLAFTILIFSLNFLPHDAANITAATTTSPEFSTSVLNVTTALNQVHHVLSLKPSFHLHQNHEQQQQQTQHTLSPSSSSSFSFQLHPRESLFNAHHHNYRSLVLTRLRRDSARVSWITSHLNKSNLRPEHLSAPVTSGVSQGTGEYFARIGVGQPTQHFYIVPDTGSDINWIQCKPCNQCYKQSDPIFDPSTSSSYALVPCKAKQCKDSELTGCYKNGCDGVLVTETLSLGKNGSVKRVPIGCGHLNHGTFAGAAGILGLGRGALSFQAHIKASSFSYCLVYRDTNKSSTLEFNSPRPGDSVTAPLLSNPKLKTFYYVGVTGVSVGGRRVSIPSSTFAIKPSGMGGIIVDSGTTVTRLPTPAYNAMRDAFVELTRHLRRAKGFLILDTCYDFSSVTVATVPTVSFELSGGGSWRLPVLGYLIPVDDKGTFCFAFAPSVEPVSIIGNVQQQGTRVSFDLVNSVIGFSTDKCS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0162 484 Gene3D Acid Proteases 132 306 IPR021109 -
Lja4g0162 484 Pfam Xylanase inhibitor C-terminal 329 479 IPR032799 -
Lja4g0162 484 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 360 371 IPR001969 GO:0004190|GO:0006508
Lja4g0162 484 PANTHER PROTEIN ASPARTIC PROTEASE IN GUARD CELL 1 38 483 - -
Lja4g0162 484 MobiDBLite consensus disorder prediction 72 94 - -
Lja4g0162 484 PANTHER ASPARTYL PROTEASES 38 483 IPR001461 GO:0004190|GO:0006508
Lja4g0162 484 ProSiteProfiles Peptidase family A1 domain profile. 159 479 IPR033121 -
Lja4g0162 484 Pfam Xylanase inhibitor N-terminal 159 306 IPR032861 -
Lja4g0162 484 Gene3D Acid Proteases 310 484 IPR021109 -
Lja4g0162 484 SUPERFAMILY Acid proteases 152 483 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0162 Lja-Chr4 1258827 1260317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0162 139 484 Miscellaneous Gene Families AT1G77480 25.758 4.91e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0162 K22683 - gmx:100784849 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2068 2 22748617 22751214 Lja4g0162 4 1258827 1260317 ECH
Lja4g0162 4 1258827 1260317 Lja4g0162 4 1258827 1260317 ECH