Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2068 ATGGCTCCAAACCAACCATTTCTAGTTCTCACCTTCACACTCTTCATCACCATAACTCTTTCCCTTGCTCCACCCACCACCTCCACCCGCGCCACCCCAATTCACGGTTCTTCTGAGTCCTCCACCGCCGTCCTCGACGTCTCCTCCTCCCTCCACCAAGCTCACCAAGTTCTCTCCTATAGCACTCAACTTGTGGAATCTTCTCTCAAGGAAGAAACCCATCACAAACCCACTTCCTCTTCCTCCTTCTCCGTCCAGTTACACCCAAGAGGGACAGTCCTCAATGAAAAACACCGTGACTACAAAAACCTCGTACTTTCCCGACTCGCTCGTGACTCAGCCCGAGTCAACTCGCTCACCTTGAAGCTCAAGCTCGCACTCAACGGTGTCAACAAATCGGATCTCCACCCGACCCAGATGGACCAGCTTCTACCGGAGGCTCTCTCCACGCCTGTCTCCTCCGGTACCGGTCAAGGCAGCGGCGAGTACTTCAGCCGGGTCGGTGTGGGTCAACCCGCGAAGCCTTTCTACATGGTTCTCGACACCGGAAGCGACGTGAACTGGCTTCAATGCAAGCCTTGTGCTGATTGCTACCAACAATCCGACCCGATTTTCGACCCGACAACGTCCTCCACCTACGGCCCGTTGACATGCGACGCTCAACAGTGCCAGGCGCTGGAGGTTTCAGCCTGCCGGAACGGGAAGTGCCTCTACCAAGTCTCATACGGTGATGGGTCATTCACCGTTGGGGAATTCGTGACTGAAACGATGTCGTTCGGCGGATCCGGGTCGGTGAACCGGGTTGCAATCGGGTGCGGCCACGACAACGAAGGTTTATTCGTCGGCGCCGCCGGGTTGCTTGGTCTCGGAGGTGGGCCGTTGTCGTTAACCTCACAGATCAAAGCATCGTCGTTCTCGTACTGCTTGGTGGACCGTGACTCAGGGAAATCGTCGACGCTCGAGTTCAACTCAGCTCGACCCGGCGACTCAGTCACTGCACCACTACTGAAGAACCAGAAGATCGGAACCTTCTACTACGTGGAGCTCACCGGCGTCAGCGTCGGAGGCCAGATGGTCGGCATTCCGCCGGAGACATTCGAGATGGACCAAACCGGCGCCGGCGGGATTATCGTGGACTCCGGCACCGCCATAACTCGGTTGCGAACTCAGGCTTACAACTCGGTCCGTGACGCGTTCCGGAGGCTGACTCAGAACCTGCGTTCCGCCGAGGGGGTTGCGCTGTTCGACACGTGCTATGATTTGTCGACTCTGCAGTCTGTGCGTGTCCCCACCGTGTCGCTCCACTTCAGCGGCGGCAAAACGTGGTCGTTGCCGGCGAAGAATTACTTGATTCCGGTGGACTCCGCCGGTACTTTCTGTTTCGCGTTCGCGCCTACGACGTCGTCTTTGTCCATTATAGGGAACGTGCAGCAACAGGGGACACGTGTCAGCTTCGATCTTGCAAAAAATGAAGTTGGATTCTCACCCAACAAGTGCTAG 1500 0.568 MAPNQPFLVLTFTLFITITLSLAPPTTSTRATPIHGSSESSTAVLDVSSSLHQAHQVLSYSTQLVESSLKEETHHKPTSSSSFSVQLHPRGTVLNEKHRDYKNLVLSRLARDSARVNSLTLKLKLALNGVNKSDLHPTQMDQLLPEALSTPVSSGTGQGSGEYFSRVGVGQPAKPFYMVLDTGSDVNWLQCKPCADCYQQSDPIFDPTTSSTYGPLTCDAQQCQALEVSACRNGKCLYQVSYGDGSFTVGEFVTETMSFGGSGSVNRVAIGCGHDNEGLFVGAAGLLGLGGGPLSLTSQIKASSFSYCLVDRDSGKSSTLEFNSARPGDSVTAPLLKNQKIGTFYYVELTGVSVGGQMVGIPPETFEMDQTGAGGIIVDSGTAITRLRTQAYNSVRDAFRRLTQNLRSAEGVALFDTCYDLSTLQSVRVPTVSLHFSGGKTWSLPAKNYLIPVDSAGTFCFAFAPTTSSLSIIGNVQQQGTRVSFDLAKNEVGFSPNKC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2068 499 MobiDBLite consensus disorder prediction 68 89 - -
Lja2g2068 499 Pfam Xylanase inhibitor N-terminal 163 322 IPR032861 -
Lja2g2068 499 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 178 189 IPR001969 GO:0004190|GO:0006508
Lja2g2068 499 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 376 387 IPR001969 GO:0004190|GO:0006508
Lja2g2068 499 SUPERFAMILY Acid proteases 158 499 IPR021109 -
Lja2g2068 499 Pfam Xylanase inhibitor C-terminal 345 495 IPR032799 -
Lja2g2068 499 Gene3D Acid Proteases 323 499 IPR021109 -
Lja2g2068 499 ProSiteProfiles Peptidase family A1 domain profile. 163 495 IPR033121 -
Lja2g2068 499 Gene3D Acid Proteases 135 322 IPR021109 -
Lja2g2068 499 PANTHER ASPARTYL PROTEASES 37 499 IPR001461 GO:0004190|GO:0006508
Lja2g2068 499 PANTHER PROTEIN ASPARTIC PROTEASE IN GUARD CELL 1 37 499 - -
Lja2g2068 499 CDD cnd41_like 162 499 IPR033873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2068 Lja-Chr2 22748617 22751214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2068 161 499 Miscellaneous Gene Families AT1G77480 26.316 5.00e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2068 K22683 - gmx:100784849 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2068 2 22748617 22751214 Lja4g0162 4 1258827 1260317 ECH
Lja2g2068 2 22748617 22751214 Lja2g2068 2 22748617 22751214 ECH