Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0143 ATGAAGATGGGTTTACTCACTTCACCGTCTTCCACTCTCTTCTTCTTCTCCTCTTCTCATTCCAAATTCAACTTATTCCACCTTCACCTTCGCATTCTCACTCTCAATTCCTTCTCTTCTCTCCGAACCAAACCTCCTTCTCTCACCAAATGGTCCTCCCTACCACCACCACCAACCACCCACGACGACGACGACTTGTTTGACCCTTTTCCTCCTCACACCGATGACTCCAAACCCCTCAACGCCATCGACAGAGTCGTTCACCGCTTGCGGAAACTAGGCTCAAATTCCCACCACGATGAAGATGAACCACCTCCGCATGATGGGTTTTTGCGGCGAGAATGGGTTCGCCCTGATGCTCCGATGGCGGTGGACACGGTGCTGCCATGGGAGAATGATGAGGAGCTACCGCGGGTGCGTGGAGAGGATGAGGGAGGAAAAGGGTTGAGGAAGAAAACGGTTAAGGCTCCATCTTTGGCGGAATTGGCACTTGGGGTGGATGAGGTGAAGCGGTTGCGGAGAGTGGGGATGCTTGTCAAGGAGAGGGTCAGTGTCCCTAAAGCTGGTCTCACGCAGGCTGTGCTCCACAAGATTCATCATCACTGGAGGAACTGTGAGGTGGTCAGGCTCAAGTTTCATGAGCTCCTTGCTCAGAATATGAAGTTGGCTCAACAAATTGTAGAGCGTCGAACAAGAGGATTAATTATATGGAGCTCAGGAAGTGTTTTGTGGGTGTATCGTGGTAGGAATTATGAAGGGCCAATTCCCAGCAACCAATGGAATGGAAAGGGAGGTGATGATCGCCTTCTTGTGACAGATGTCTCTCTGGATAGTAACGCAACTTCCTCTTTGCCGGAAAAGAGTAATCCAATTTGGTGGAATCAACAACAGCCTCAGAATATGACGCCGGAGGAAGCAGAGTTCGACAGGATGCTTGATGATTTTGGTCCTCGTTTTGTTGAATGGTGGGGTACAGGAATACTTCCTGTGGATGCTGATTTACTTCCACCTAAGGTTACTGGTTACAAAGCACCTCTTAGGCTTCTCCCCGCTGGAATGCGTTCCCGCATAACCGAGGATGAGCTGACAAAATTGCGGAAACTATCCAAAGCCCTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAGATCTTCAAGGGCTGGCTTGTGCTATTCTCAAGCTTTGGGAGAAAAGCTTAGTTGCAAAGATTGCTGTCAAGCGTGGTATCCAGAATACAAACAACGAACTGATGGCAGATGAGTTGAAGAAATTAACAGGAGGTGCTTTGTTGCTAAGGAATAAATATTTCATTGTAATATATCGTGGGAAGGACTTTGTTCCAACCAGTGTGGCTGCTGTTTTAGCTGAAAGACAGGAATTGACGAAGCAGGTGCAAGATGCTGAGGAGAAGGTGCGTTGCAGAACTGTTGATGAGACTCTATCAGGGGAAGATGATGCAAATGGACAAGCAGGATCATTGGCTGAGTTCTATGAGGCTCAGGCACGCTGGGGAAGGGATATATCTAATAAAGAACGTGAGAAAATGATGAAAGAGGCTACTGAAGCCAAGAATGTTAGGCTTATAAAAAAAGTTGAACTTAAACTAGCTTCTGCCCAGGCCAAAAGACTAAGAGCAGAAAAGCTATTAGCTAAAGTAGAAGCATCCCTGGTTCCTGCTGTTCCTGATGATGATCGGGAAACAATCACAGATGAAGAGCGTATAATGTTTCGCTCGGTTGGTTTAACAATGAAGGCATACTTGCAACTTGGTACACGTGGTGTTTTTGATGGTGTAATTGAAAACATGCATCTGCATTGGAGGCACCGAGAACTTGTTAAATTAATAACGAAACAAAAGACCCTTGCCTTTGTTGAAGACACAGCTAGGTTACTGGAATACGAGAGTGGTGGAATACTAGTTGCAATAGATAGACTTCCCAAAGGATTTTCTCTTATCTACTATCGTGGAAAGAATTATAGGCGGCCCATTAGTTTGTGGCCTAGAAACCTTTTAACGAAGGCAAAAGCATTGCAGCGATCAATAAACATGCAACGACATGAGGCTCTGAGTCAGCATATAACAGAACTGGAGAAAAAAATAGAAAAAATGAAAAAAGAACTTAGTGGGGATGAAGGCTCTAGTCCCCAAGTTATCGATGGTGATTTTGATGACAAGAAAGACAGTGATTGCGATGAGGATTATGAAATTTCAAGCTTGGAAAAATGA 2226 0.4551 MKMGLLTSPSSTLFFFSSSHSKFNLFHLHLRILTLNSFSSLRTKPPSLTKWSSLPPPPTTHDDDDLFDPFPPHTDDSKPLNAIDRVVHRLRKLGSNSHHDEDEPPPHDGFLRREWVRPDAPMAVDTVLPWENDEELPRVRGEDEGGKGLRKKTVKAPSLAELALGVDEVKRLRRVGMLVKERVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLAQNMKLAQQIVERRTRGLIIWSSGSVLWVYRGRNYEGPIPSNQWNGKGGDDRLLVTDVSLDSNATSSLPEKSNPIWWNQQQPQNMTPEEAEFDRMLDDFGPRFVEWWGTGILPVDADLLPPKVTGYKAPLRLLPAGMRSRITEDELTKLRKLSKALPCHFALGRNRDLQGLACAILKLWEKSLVAKIAVKRGIQNTNNELMADELKKLTGGALLLRNKYFIVIYRGKDFVPTSVAAVLAERQELTKQVQDAEEKVRCRTVDETLSGEDDANGQAGSLAEFYEAQARWGRDISNKEREKMMKEATEAKNVRLIKKVELKLASAQAKRLRAEKLLAKVEASLVPAVPDDDRETITDEERIMFRSVGLTMKAYLQLGTRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDRLPKGFSLIYYRGKNYRRPISLWPRNLLTKAKALQRSINMQRHEALSQHITELEKKIEKMKKELSGDEGSSPQVIDGDFDDKKDSDCDEDYEISSLEK* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0143 741 SUPERFAMILY YhbY-like 164 256 IPR035920 -
Lja4g0143 741 SUPERFAMILY YhbY-like 567 665 IPR035920 -
Lja4g0143 741 Coils Coil 450 470 - -
Lja4g0143 741 Coils Coil 528 555 - -
Lja4g0143 741 Gene3D - 356 449 IPR035920 -
Lja4g0143 741 Gene3D - 163 259 IPR035920 -
Lja4g0143 741 Gene3D - 567 665 IPR035920 -
Lja4g0143 741 ProSiteProfiles CRM domain profile. 162 258 IPR001890 GO:0003723
Lja4g0143 741 SMART CRS1_YhbY_2 568 655 IPR001890 GO:0003723
Lja4g0143 741 SMART CRS1_YhbY_2 164 247 IPR001890 GO:0003723
Lja4g0143 741 SMART CRS1_YhbY_2 357 441 IPR001890 GO:0003723
Lja4g0143 741 Coils Coil 686 713 - -
Lja4g0143 741 MobiDBLite consensus disorder prediction 725 741 - -
Lja4g0143 741 ProSiteProfiles CRM domain profile. 355 452 IPR001890 GO:0003723
Lja4g0143 741 ProSiteProfiles CRM domain profile. 566 666 IPR001890 GO:0003723
Lja4g0143 741 PANTHER (CRM) DOMAIN PROTEIN, PUTATIVE-RELATED 7 708 - -
Lja4g0143 741 SUPERFAMILY YhbY-like 357 448 IPR035920 -
Lja4g0143 741 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 7 708 IPR045278 GO:0000375|GO:0003729
Lja4g0143 741 Pfam CRS1 / YhbY (CRM) domain 569 655 IPR001890 GO:0003723
Lja4g0143 741 Pfam CRS1 / YhbY (CRM) domain 358 441 IPR001890 GO:0003723
Lja4g0143 741 Pfam CRS1 / YhbY (CRM) domain 167 247 IPR001890 GO:0003723
Lja4g0143 741 MobiDBLite consensus disorder prediction 704 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0143 Lja-Chr4 1086630 1091903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0143 - - vra:106765477 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0143 4 1086630 1091903 Lja4g0143 4 1086630 1091903 ECH
Lja4g0143 4 1086630 1091903 Lja2g2098 2 23234223 23241410 PCT