Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2098 ATGGCGTTCACCAACACCACTGGTAAACTCTCAGAATTATCTTTCAGTTCATCACCATCATCACTCTCACTCTCACTCAACCTTCCTCGCTTTTTCACTCTCACCCATCTCTTCCTCCCTCATTCCAAACCCTCTTTTCGCACTCTCACCTTCTCTTCTCTCCGAACCAGCCACCACCACAATTCCTCCCCAAAACCCAACCCCACCGCGCCCTGGCTCGCCAAAACCGCCTCACCTCCCAAAAGGGTCTCCGAATCTGCCACCGAAGAAGACCCATCGAACCGTCAACCGGGTATTCGACAAAACCCGGTTGAAAGGATTGTTCTCCGGTTGCGGAACCTGGGGTTGGTTTCTGATGAAGATGAGGAAGCAGCAGCAGCAGGAGGAGAAGAAGAAGGAGAAGATAGGGTCAGTCCATTGCCGGTGACCGGCGAGGAGAAGCTGGGGGAGTTGCTGAGGCGGGAATGGGTTCGTCCTGATGCCGGGTTGCTGGAGGATGATGATGAGGGTGAGGAGGGGGTGTTGCCGTGGCAGAAAGAGGAAGAGGGGTTTGTGGGTAGTGGGGTTGAGGAGGGGTTGAGGAGGAGGATGTTAAGGGCTCCAAGTTTGGCTGAGTTGACACTTGAGGATGAGTTGTTGAGGAGGTTGAGGAGAGAGGGGATGCGTGTGAGGGAGAGGATTAGTATCCCCAAAGCTGGTCTCACAAAAGATGTGATGGATAAGATTCATGAGAAGTGGAGGAAGGAAGAGCTGGTGAGGCTCAAGTTTCATGAGGAGCTTGCGCGGAACATGAAGATTGCTCATGAGATTGTTGAGCGTCGAACGGGAGGATTGGTTACATGGAGATCGGGAAGTATTATGATGGTGTATCGTGGTATTAATTATCAAGGGCCTCCCTCCACGAAGGAACTTGATGAAAAAGAAGGTGATGGCTTTTTTATCCCGGATGTCTCATCAGGAAGCTTGCCAAGCACTAAAGACAGTAATGCAATTGCAAACTCATCCCTGGAGAAGAGTGAGCTAGCTGCAAGGAATCAGGAACAGCCTAAGAACATGACGGAAGAGGAAGCAGAGTACAATGCGCTGCTTGATGGTTTGGGTCCTCGTTTTGTTGAATGGTGGGGTACAGGAGTACTTCCTGTCGATGCTGATTTACTTCCCCGTACAGTTCCTGGTTACAAAACACCTTTTAGGCTTCTTCCTGCAGGGATGCGTTCTCGACTAACAAATGCAGAGATGACCAATTTAAGAAAACTTGCAAAATCACTTCCTTGCCATTTTTCCTTGGGGAGAAATAGAAATCACCAAGGTCTGGCATGTGCTATTCTTAAGCTTTGGGAAAAAAGTTTACTTGCAAAGATTGCTATCAAACGTGGTATCCAGAACACAAACAATAAATTAATGGCTGATGAGCTCAAGACATTAACAGGAGGCACCTTGCTGCTAAGGAATAAATATTACATTGTTATATATCGTGGGAAGGACTTTGTTCCAACAGATGTGGCTGCAGTTTTAGCTGAAAGACAGGAATTGACAAAACAGGTACAAGATGTTGAAGAGAAGGTGCGTTGCAGAGCTGTTGATGCAACATCAGGACAAGGTGAAGCAACAACACCGGCAGGCGCTGCAGTTTTAGCTGAAAGACAGGAGTTGACAGAACAGGTACAAGATGTTGAAGAGAAGGTGCATTGCAGAGCTGTTGATGCAACATCAGGACAAGGTGAATCAACAACACCGGCAGGCTCATTAGCAGAGTTTTATGAGGCCAAGGCTCGTTGGGGAAGGGACATATCTACGGAAGAACGTGAGAAGATGAAGGAAGAAGTTGCCAATGCCAAGACTGTGAAGCTTGTCAGGCATACTGAGCATAAGCTATCTCTTGCCCAGGCCAAAAAGCTTAGAGCAGAAAAGCTGTTAGCCAAAATAGAAGCAGCTATGGTTCCAGGTGGTCCTGATTATGACCAGGAAACCATCACAGAGGAAGAGCGTGTCGTGTTCCGTAGGATTGGTTTGAGAATGAAGGCATACTTACCACTTGGTATACGTGGTGTTTTTGATGGTGTCATTGAAAATATGCATTTGCATTGGAAACACAGGGAACTTGTAAAATTGATATCAAAACAAAAGACTCTGGCTTTTGTTGAAGACACAGCAAGGTTACTGGAATATGAGAGTGGTGGAATACTAGTGGCAATAGAAAGAGTTTCTAAAGGATTTGCTCTTATTTATTATCGTGGAAAGAATTATAAACGGCCCATTACTCTCAGGCCTAGAAACCTTCTAACAAAGCAAAAGGCATTGAAGCGTTCCATAGCCATGCAACGCCATGAGGCTCTGAGTCAGCATATTACAGAACTGGAAAAAAATATAGACGAAATGAACAAAGAACTTGGCGTGTCTCAAGATTTGGAGGTTCAAGACAAGTGGAGCATGGAGGAAGAGGACAAAAAACAACTAGACCCCATCTCAGAACTCACCCAAAGTGAGGATGAGGATTCTGATGGTTTTGATGATGAGGAAGACTCCGATTGGGATGAAGATGAGGACGCTGAGTTTCCAGAATTCAACATTGATGGGCATCCTTGA 2586 0.4644 MAFTNTTGKLSELSFSSSPSSLSLSLNLPRFFTLTHLFLPHSKPSFRTLTFSSLRTSHHHNSSPKPNPTAPWLAKTASPPKRVSESATEEDPSNRQPGIRQNPVERIVLRLRNLGLVSDEDEEAAAAGGEEEGEDRVSPLPVTGEEKLGELLRREWVRPDAGLLEDDDEGEEGVLPWQKEEEGFVGSGVEEGLRRRMLRAPSLAELTLEDELLRRLRREGMRVRERISIPKAGLTKDVMDKIHEKWRKEELVRLKFHEELARNMKIAHEIVERRTGGLVTWRSGSIMMVYRGINYQGPPSTKELDEKEGDGFFIPDVSSGSLPSTKDSNAIANSSLEKSELAARNQEQPKNMTEEEAEYNALLDGLGPRFVEWWGTGVLPVDADLLPRTVPGYKTPFRLLPAGMRSRLTNAEMTNLRKLAKSLPCHFSLGRNRNHQGLACAILKLWEKSLLAKIAIKRGIQNTNNKLMADELKTLTGGTLLLRNKYYIVIYRGKDFVPTDVAAVLAERQELTKQVQDVEEKVRCRAVDATSGQGEATTPAGAAVLAERQELTEQVQDVEEKVHCRAVDATSGQGESTTPAGSLAEFYEAKARWGRDISTEEREKMKEEVANAKTVKLVRHTEHKLSLAQAKKLRAEKLLAKIEAAMVPGGPDYDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNLLTKQKALKRSIAMQRHEALSQHITELEKNIDEMNKELGVSQDLEVQDKWSMEEEDKKQLDPISELTQSEDEDSDGFDDEEDSDWDEDEDAEFPEFNIDGHP* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2098 861 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 11 540 IPR045278 GO:0000375|GO:0003729
Lja2g2098 861 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 541 855 IPR045278 GO:0000375|GO:0003729
Lja2g2098 861 MobiDBLite consensus disorder prediction 334 348 - -
Lja2g2098 861 SMART CRS1_YhbY_2 208 291 IPR001890 GO:0003723
Lja2g2098 861 SMART CRS1_YhbY_2 658 745 IPR001890 GO:0003723
Lja2g2098 861 SMART CRS1_YhbY_2 408 492 IPR001890 GO:0003723
Lja2g2098 861 Coils Coil 776 803 - -
Lja2g2098 861 MobiDBLite consensus disorder prediction 120 141 - -
Lja2g2098 861 Gene3D - 206 305 IPR035920 -
Lja2g2098 861 Gene3D - 657 757 IPR035920 -
Lja2g2098 861 Gene3D - 407 500 IPR035920 -
Lja2g2098 861 SUPERFAMILY YhbY-like 207 298 IPR035920 -
Lja2g2098 861 Coils Coil 625 645 - -
Lja2g2098 861 Coils Coil 541 561 - -
Lja2g2098 861 ProSiteProfiles CRM domain profile. 406 503 IPR001890 GO:0003723
Lja2g2098 861 Coils Coil 501 521 - -
Lja2g2098 861 MobiDBLite consensus disorder prediction 56 102 - -
Lja2g2098 861 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 11 540 - -
Lja2g2098 861 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 541 855 - -
Lja2g2098 861 MobiDBLite consensus disorder prediction 334 354 - -
Lja2g2098 861 MobiDBLite consensus disorder prediction 801 824 - -
Lja2g2098 861 SUPERFAMILY YhbY-like 657 755 IPR035920 -
Lja2g2098 861 ProSiteProfiles CRM domain profile. 206 302 IPR001890 GO:0003723
Lja2g2098 861 MobiDBLite consensus disorder prediction 1 21 - -
Lja2g2098 861 SUPERFAMILY YhbY-like 408 498 IPR035920 -
Lja2g2098 861 Coils Coil 595 615 - -
Lja2g2098 861 MobiDBLite consensus disorder prediction 825 853 - -
Lja2g2098 861 MobiDBLite consensus disorder prediction 801 861 - -
Lja2g2098 861 Pfam CRS1 / YhbY (CRM) domain 209 291 IPR001890 GO:0003723
Lja2g2098 861 Pfam CRS1 / YhbY (CRM) domain 659 734 IPR001890 GO:0003723
Lja2g2098 861 Pfam CRS1 / YhbY (CRM) domain 408 492 IPR001890 GO:0003723
Lja2g2098 861 ProSiteProfiles CRM domain profile. 656 756 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2098 Lja-Chr2 23234223 23241410 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2098 - - lja:Lj2g3v0726310.1 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2098 2 23234223 23241410 Lja2g2098 2 23234223 23241410 ECH
Lja4g0143 4 1086630 1091903 Lja2g2098 2 23234223 23241410 PCT