Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0056 ATGGGGAGTTCTGGATGGAGCAACCACAATAATCAACGGTATGGAATAACTGAACCCATCTCATTGGCTGGACCAACTGAAGAAGATGTCATCAAAACCCGTCAACTTGACAAGTTCTTGCAAGATGCTGCCTTGTATGAGACTCAACAGGAGGCAATTACCAGGGAGGAGGTGCTTGGAAGACTAGACCAGATTGTCAAGATTTGGGTCAAAACCATTAGCCGTGCAAAGGAACATAACAATCAACTGGTGCAAGAAGCAAATGCCAAGATTTTTACCTTTGGCTCCTATCGGCTTGGGGTGCATGGCCCTGGAGCAGATATAGACACTTTATGCGTGGGACCTATACATGCATCCAGAGATACGGATTTCTTTGGTGAGCTACATAAAATGTTATCTGAGATGCCGGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTCATGTTCCGGTGATGAGGTTCAAGTTCAATGGTGTTTCTATAGATCTCCTTTATGCAAGATTATCTTTGTGGGTTATTCCTGAAGACTTGGATATATCCCAGGAGTCAGTATTACAACATGCGGATGAACAAACTGTTCGTAGTCTTAATGGTTGTAGAGTGACTGATCAAATCTTACGTTTGGTTCCAAATATTCAGAACTTTCGAATGACATTGAGATGCATGAAGCTATGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTACAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTAGCTCGAATATGCCAGCTATTTCCTAATGCACTGCCTAATATGTTAGTGTCTCGGTTCTTTAGGGTATATACTCAGTGGCGTTGGCCAAACCCAGTAATGCTTTGTCCTATTGAAGAAGGATCTCTTGGACTTCAAGTTTGGGATCCTAGAAAATATCCCAAGAATAGATACCATCTGATGCCGATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTATAATGTGTCTGCTAGTACATTGCATATTATGATGGAGGAGTTTCAGAGGGGGAGTGAAATATGTGAGGCTGTGGAGGCTAACAAGGCTGATTGGGACACTCTTTTTGAGCCTTATCCCTTTTTTGAATCTTATAAGAATTATTTGCAGATAGATATTTCTGCAGAAAACGCGGATGATCTTAGACTATGGAAAGGTTGGGTTGAGTCTCGTTTGCGGCAGTTGACATTGAAGATTGAGAAGCACACTTACGGCATGCTTCAAAGTCATCCACATCCTGGTGAATTTTCTGATAAATCTAGACCTTTACACTGCTCTTACTTCATGGGTCTGCAACGTAAGCAGGGAGTTCCAGTCAATGATGGTGAACAATTTGATATAAGATTAACTGTTGAAGAATTTAAGCAAACAGTCAACATGTACATGCTATGGAAACCTGGAATGGATATCCACATCTCCCATGTAAAACGCCGTAATATACCTAACTTTGTATTTCCTGGAGGTGTTCGACCTTCCCGCCCAGCTAAAATAACCTGGGAGAGTAAGCGAAATTCAGAATTAATGATATCTGGCAATGGTCAAGCAGAAAAGTCTGAAGAAGATAAAGTGGTTGTCTTAGGAGAAAATGATGATAGGAAGAGAAAGCAAGCAGAGGATAGCCTGGATGACTTGAGAAATTCCAAGTCCTTTGCATCTTTGCCTCCCTCCAGCAGGGAAGTTGATGAAGATATAAATCCTATTGGCACTGCTAGTTCCTGCTTTGTGGAATGTGATGACGCAGAAGTCAACAGTATGAGTGAACAAAATATTGAGAAACCTGATCTGGAATCTTCAGGGGAGTGTCCTTCTAGGGATAGAGAGACCACCGGATCAGTGAGAAACAACTCAAATGTCAATCCTATGCCTATAATTTTTGCTACCGATACATCTAGTTCTAAAGAAGCAGAAAAGCTGGCCATCGAAAAGATTATGCCTGGTCCATATGATGCGCATCAAGCCTTTCCAAAAGAACCTGATGAGCTTGAAAATGATATTGAGGATAAAAATCGAGTCAAGGATTTTGGTATGAACACGCAAACCAGAAACTTGGACTCTTCAAACTCAAGCTCATGTGTGGCAGAAGAACCAGTTGTTTCTAAAACGGAAACCACTTGTTCAACTAATCTATACTCTAGTGGGGTCTTGGAGGAGCTTGAGCCTGCTGAGCTGACCGCGCCATTGTTAAGTGGGACTCCTGCACCAGTGCCAGAGCGGAAGCCCCTTATCAGATTCAATTTCACATCCTTGGGGAAAGCTGCTGACAAAAGTTGTTAG 2277 0.4229 MGSSGWSNHNNQRYGITEPISLAGPTEEDVIKTRQLDKFLQDAALYETQQEAITREEVLGRLDQIVKIWVKTISRAKEHNNQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPIHASRDTDFFGELHKMLSEMPEVTELHPVPDAHVPVMRFKFNGVSIDLLYARLSLWVIPEDLDISQESVLQHADEQTVRSLNGCRVTDQILRLVPNIQNFRMTLRCMKLWAKRRGVYSNVTGFLGGINWALLVARICQLFPNALPNMLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSSYNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADDLRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRPLHCSYFMGLQRKQGVPVNDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITWESKRNSELMISGNGQAEKSEEDKVVVLGENDDRKRKQAEDSLDDLRNSKSFASLPPSSREVDEDINPIGTASSCFVECDDAEVNSMSEQNIEKPDLESSGECPSRDRETTGSVRNNSNVNPMPIIFATDTSSSKEAEKLAIEKIMPGPYDAHQAFPKEPDELENDIEDKNRVKDFGMNTQTRNLDSSNSSSCVAEEPVVSKTETTCSTNLYSSGVLEELEPAELTAPLLSGTPAPVPERKPLIRFNFTSLGKAADKSC* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0056 758 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 486 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lja4g0056 758 Gene3D Poly(A) polymerase predicted RNA binding domain 361 476 - -
Lja4g0056 758 Gene3D - 15 357 - -
Lja4g0056 758 MobiDBLite consensus disorder prediction 527 546 - -
Lja4g0056 758 MobiDBLite consensus disorder prediction 527 566 - -
Lja4g0056 758 Pfam Nucleotidyltransferase domain 74 167 IPR002934 GO:0016779
Lja4g0056 758 MobiDBLite consensus disorder prediction 586 623 - -
Lja4g0056 758 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Lja4g0056 758 MobiDBLite consensus disorder prediction 609 623 - -
Lja4g0056 758 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Lja4g0056 758 Pfam Poly(A) polymerase predicted RNA binding domain 424 493 IPR007010 GO:0003723|GO:0043631
Lja4g0056 758 Pfam Poly(A) polymerase predicted RNA binding domain 362 420 IPR007010 GO:0003723|GO:0043631
Lja4g0056 758 MobiDBLite consensus disorder prediction 594 608 - -
Lja4g0056 758 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Lja4g0056 758 PANTHER POLY A POLYMERASE 1 715 - -
Lja4g0056 758 CDD NT_PAP_TUTase 55 209 - -
Lja4g0056 758 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Lja4g0056 758 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0056 Lja-Chr4 450283 455857 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0056 K14376 - gmx:100816915 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2142 2 24190932 24197977 Lja4g0056 4 450283 455857 ECH
Lja4g0056 4 450283 455857 Lja4g0056 4 450283 455857 ECH