Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2142 ATGGCTATCCCTGGATTGAGCAATCAAAATAGTGGGCAGCAAAGATTAGGCATAACTGAGCCTATTTCATTGGCTGGACCAACTGAGTGTGATGTGATCAAGACCCGCGGACTCGAGAAGTACTTGCAAGGTGCTGGATTGTATGAGAGTCAGCAGGAGGCTGTGGGTAGGGAGGAAGTTCTTGGCAGGCTAGACCAGATTGTGAAGAATTGGATTAAGATTGTTAGCCGTGCCAAGGGATTCAATGAACAACTAGTGCAAGAAGCAAATGCAAAGATTTTCACCTTTGGCTCCTATAGGCTTGGGGTGCATGGCCCTGGAGCTGATATTGATACTCTTTGTGTGGGACCTAGACATGCAACCAGACATGAAGATTTCTTTGGTGAGCTAGGTAAGATGCTATTCGAGTCGCAGGAAGTAACAGAATTTCACCCTGTGCCTGATGCACATGTCCCTGTGATGAAATTCAAATTCAATGGAGTTTCTGTAGATCTCCTTTATGCAAGATTGTCATTGTGGGTTATTCCTGAAGACTTAGATATATCACAGGAATCAGTATTACAAAATGTAGATGAACAAACTGTTCTCAGTCTTAATGGTTGCAGAGTAACTGATCAAGTCCTGCGTCTAGTCCCAAATATTCAGAATTTTCGCACAACATTGAGATGCATGAGATTTTGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTGCGGGTTTTCTTGGTGGTATAAACCTGGCATTGCTTGTTGCTCGAATATGCCAGCTATATCCTAACGCACTGCCTAATATGTTAGTGTCTCGATTCTTTAGGGTATATACTCAATGGCGATGGCCAAACCCAGTCATGCTTTGTGGTATTGAAGAAGGATCTCTTGGACTACAGATTTGGGATCCTAGAAGAAATCCCAAGGATAAATTTCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACTTACAATGTGACAGCAAGTACACTGCGTATTATGTCAGAGGAGTTTCAGAGGGGAAGTGAAATATGTGAGGCTATGGAGGGTAGCAAGGCTGATTGGGATTCTCTTTTTGAGCCATATCCCTTTTTTGAATCTTACAAGAATTATCTACAGATAGACATTGCAGCAGAGAATGCAGATGATCTTAGATCATGGAAAGGATGGGTTGAGTCCCGTCTCCGCCAGTTGACATTGAAGATTGAGAGGCACACATATGGTGTTCTTCAGTGTCATCCATATCCTGGTGAATTTTCAGACAAATCTAGACCTTTCCACTGCTGTTACTTTATGGGTCTGCAGCGTAAGCAAGGTGTTCCAGTGAATGAAGGTGAACAATTTGACATAAGGCTAACTGTTGAAGAATTTAAGCTTGCTGTCAATTCTTACAGTACTTGGAAACCTGGAATGGATATCCATGTCTCCCATGTTAAGCGCCGTAATATACCAAGCTTCATATTTCCTGGTGGTGTCCGACCTTCCCTCCCATCTAATAGACAAAGTTCCAAATTAAGGGATTCTGGACTTGGTCAAGCAGAAAAGTCTCAAGGAGTTAAGGTTGACTTTGTAGCAAATGATATGAAGAAGAGAAAGCGACCAGAGGAGAACTTGGATAGTAATAACTCGAGGAACTCAATGTCCTTTGTATCTTTACCTCCACCCAACGGCGATGTTCACAAAGATATAACTCCTATTAGCGCCTCTGGTTCTTGTTCTATGAAATTTGATGACTCAGAAGTCAGCAGTATAGGTGCCCCAAAAAGTGAGAAACCTTCTGGGAAATCTATAGGGGAGATTCCTTCTGGGGATAGTGAGACCAATGGATTGGTAACAGGCAACCAACAAGAAAACCCTATACTTACTGCTCCTGATACATCTAATTCTAAAGAAGAGGAAAAACTGGCCATTGAGAAGATCATGTCCGGTCCCTATGATGGGCGTCAGGCCTTGGCAGAACCGGATGAACTTGAAGATGATAATATGTATCCAAATCAAGTCAAAGATCATGCTGGGGACATGAAAAGCAGCACTTGTGATTCTTTAAACTCAAAGTCTGAAGTGGCAGAAGAGCCAGTTATTTCTAAGGGAACCACATGTTCACCTTATCTATGCTCTAATGGGGGCCTGGAGGAGCTTGAGCCAGCTGAGTTGTCAGCACCATTGTTAAGTGGTGTCATCACTCCCGTACCACAGCGGAAGCCTCTTATCAGGTTGAACTTCACCTCCTTAGGCAAAGCTGCTGCGGATAAAAGTTCCTAG 2262 0.4302 MAIPGLSNQNSGQQRLGITEPISLAGPTECDVIKTRGLEKYLQGAGLYESQQEAVGREEVLGRLDQIVKNWIKIVSRAKGFNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRHEDFFGELGKMLFESQEVTEFHPVPDAHVPVMKFKFNGVSVDLLYARLSLWVIPEDLDISQESVLQNVDEQTVLSLNGCRVTDQVLRLVPNIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINLALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCGIEEGSLGLQIWDPRRNPKDKFHLMPIITPAYPCMNSTYNVTASTLRIMSEEFQRGSEICEAMEGSKADWDSLFEPYPFFESYKNYLQIDIAAENADDLRSWKGWVESRLRQLTLKIERHTYGVLQCHPYPGEFSDKSRPFHCCYFMGLQRKQGVPVNEGEQFDIRLTVEEFKLAVNSYSTWKPGMDIHVSHVKRRNIPSFIFPGGVRPSLPSNRQSSKLRDSGLGQAEKSQGVKVDFVANDMKKRKRPEENLDSNNSRNSMSFVSLPPPNGDVHKDITPISASGSCSMKFDDSEVSSIGAPKSEKPSGKSIGEIPSGDSETNGLVTGNQQENPILTAPDTSNSKEEEKLAIEKIMSGPYDGRQALAEPDELEDDNMYPNQVKDHAGDMKSSTCDSLNSKSEVAEEPVISKGTTCSPYLCSNGGLEELEPAELSAPLLSGVITPVPQRKPLIRLNFTSLGKAAADKSS* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2142 753 MobiDBLite consensus disorder prediction 524 539 - -
Lja2g2142 753 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Lja2g2142 753 MobiDBLite consensus disorder prediction 600 626 - -
Lja2g2142 753 MobiDBLite consensus disorder prediction 495 510 - -
Lja2g2142 753 CDD NT_PAP_TUTase 57 211 - -
Lja2g2142 753 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Lja2g2142 753 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Lja2g2142 753 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Lja2g2142 753 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Lja2g2142 753 MobiDBLite consensus disorder prediction 490 633 - -
Lja2g2142 753 PANTHER POLY A POLYMERASE 1 677 - -
Lja2g2142 753 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lja2g2142 753 MobiDBLite consensus disorder prediction 654 683 - -
Lja2g2142 753 Pfam Nucleotidyltransferase domain 77 166 IPR002934 GO:0016779
Lja2g2142 753 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 677 - -
Lja2g2142 753 Pfam Poly(A) polymerase predicted RNA binding domain 364 423 IPR007010 GO:0003723|GO:0043631
Lja2g2142 753 Gene3D - 17 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2142 Lja-Chr2 24190932 24197977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2142 K14376 - gmx:100816915 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2142 2 24190932 24197977 Lja4g0056 4 450283 455857 ECH
Lja2g2142 2 24190932 24197977 Lja2g2142 2 24190932 24197977 ECH