Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0054 ATGGGGCCGCCGGTACCTGTTCCCCCGAAGCCTATGCCGAGACTCATGCCGGATCCGAACAAAGATCACCAACCGGAATCGTACGAGGACTTGCAACTGGGTTACCACTCTTCGCTTTTCAGCGCGTTGGAGAGGCATCTGCGACCAGAAATGCTCACCGCAACTCGCGACGTCAAGGCCAACTTCATGCGCGACATTTTGAAAGACTACTGGTCGCCTCAGAGGCTGGAAAGAGACCGATGGTATAAAACATACAGAGAGCGTATTATCACAAATTATCAGCCTCTGCATGAAGAATTGTACACTCTTAATCCTAAAGCATTCTTTGTCCCAGAGTTTCTGGAAGCTATTAATGTTAATACTGAACAAAGCTTTAGAAGTATAATGTCTCGGCCCGCCCCAGGCATTTTTACATTTAAAATGCTTCAGCCACACTTTTGTGAGTTGTTGTTATCAGAGGTTGAAAATTTTAAGAAGTGGGTTCATGAGGCAAAATTTCGGATTAAGCGTCCCAATATAATGAATAAGTATGGTGCTATACTTGACGACTTTGGCCTTGAAACCATGCTTCACAGGCTTATGGAAGATTTTATTTCTCCTTTATCGAAAGTTTTCTTTTCAGGAATTGGTGGATCAAACTTGGATTCTCATCATGGGTTTATCGTTGAATATGGTATAAATAGAGATGTTGACATAGATCTCCATGTGGATGACTCAGAAGTTACCTTGAATGTTTGCCTCAGCAAGGAATTTTTGGGAGGGGAATTGTTTTTTCGGGGCATGCGATGTGATAAGCATTTAACAACAGCAACTTATTCAGATGAAATCTATGACTATCCCCATGTCACTGGACAAGCTGTGCTTCATCATGGTCGTATTCGCCATGGTGCTAAAGCCACAACTTCAGGTCGCCGGGTCAACCTTCTTTTATGGTGCAGAAGTTCTCGTTTCAGAGTGGAGAAAATGCTCAGAAAAGATTGCTCTAGCTGGTGTGGTGTGTGCAATCAAGAGAAGGAAGACTCGAAGCGCAGCTTGGAAAGGCAATTGGCACTGTTAAGGAAGGGAGGTGAAACAACTCCATGA 1083 0.4386 MGPPVPVPPKPMPRLMPDPNKDHQPESYEDLQLGYHSSLFSALERHLRPEMLTATRDVKANFMRDILKDYWSPQRLERDRWYKTYRERIITNYQPLHEELYTLNPKAFFVPEFLEAINVNTEQSFRSIMSRPAPGIFTFKMLQPHFCELLLSEVENFKKWVHEAKFRIKRPNIMNKYGAILDDFGLETMLHRLMEDFISPLSKVFFSGIGGSNLDSHHGFIVEYGINRDVDIDLHVDDSEVTLNVCLSKEFLGGELFFRGMRCDKHLTTATYSDEIYDYPHVTGQAVLHHGRIRHGAKATTSGRRVNLLLWCRSSRFRVEKMLRKDCSSWCGVCNQEKEDSKRSLERQLALLRKGGETTP* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0054 360 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 10 345 - -
Lja4g0054 360 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 215 314 IPR005123 -
Lja4g0054 360 Coils Coil 335 355 - -
Lja4g0054 360 MobiDBLite consensus disorder prediction 1 15 - -
Lja4g0054 360 SMART p4hc 134 313 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lja4g0054 360 MobiDBLite consensus disorder prediction 1 27 - -
Lja4g0054 360 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 10 345 - -
Lja4g0054 360 Gene3D q2cbj1_9rhob like domain 136 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0054 Lja-Chr4 440193 446669 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0054 - - vvi:100262884 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2145 2 24206149 24214204 Lja4g0054 4 440193 446669 ECH
Lja4g0054 4 440193 446669 Lja4g0054 4 440193 446669 ECH
Lja4g0054 4 440193 446669 Lja2g2145 2 24206149 24214204 PCT