Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0046 ATGAGACGGCAGAGACAAGAGGTGGTGGAAGAAGTGAAGAGGCAGTTATGGTTAGCACTGCCTCTCTGCTCAGTTGGAATCCTCCAATACAGTCTTCAAACAATGTCTGTGATGTTTGTTGGCCACCTTGGTACACTTCCTCTTTCAGGTGCTTCCATGGCCACTTCCTTTGCATCAGTCACTGGCTTCAACTTACTGATGGGATTGGCTAGTGCACTGGACACATTTTGTGGTCAATCATATGGAGCAGGACAGTACCATATGCTTGGCATACACATGCAAAGATCCATGCTTGTTGTTTTAATTGTAAGTGTATTCCTTGCAATAATATGGGCAAACACAGAACCAATTCTAGTTGCTATGCACCAGGACAAGGCCATTTCCAGGGAAGCTGGCTCTTATGCCCGTTTCATGATCCCAAGTTTATTTGCATATGGTCTTCTACAGTGCCTTCTCAAGTTCTTGCAAAACCAAAACATTGTCTTCCCAATGGTTCTAACATCCGGAATTATAGCTTTGCTTCACATCCTTTTGTGTTGGGTTCTGGTTTTCAAAACCAGGCTTGGAAGCAGAGGTGCAGCATTGTCCAATTCCATATCTTATTGGGTAAATGTGCTCTTGATCTCTCTATATGTGAAGTTCTCTCCTGCTTGCAAACAAACATGGACTGGGTTTTCAGTGAGAGCCCTGCACAATCTCCTTGACTTCCTTAAACTTGCTGTTCCTTCAGCTCTTATGCTTTGCTTGAAAGTCTGGACATTTGAAGTGATAGTTCTCGTGTCTGGTCTTCTTCCTAATCCAGCATTAGAAACTTCAGTGCTTTCAATATGCCTCAATACATTTGGCCTAGCTTGGATGATCCCTTTTGGATTCAGTGCTGCTGTAAGTGTAAGGGTCTCAAATGAACTTGGGGCTGGAAATCCACAAGCTGCAAGTTTAGCAGTTCAGGTGGTGTTGTCCATTGCTTTCATTGAAGGCATCTTTTTAGCTTCGACCATGATTCTTCTGCGGAATATCTGGGGCCATGTTTACAGTAATGACAAAGAAGTCATTAGCTACATGTCAGCCATGATGCCAATTTTGGCCATTTCCAGCTTCCTAGATGGGATCCAAAGTGCACTTTCAGGTATTCTTGCAGGATGTGGACGTCAGAAGATTGGTGCCTGTGTGAATCTTGGCTCATTCTATCTTGTGGGCGTTCCTTGTGCTGTTGCATTAGCATTTCTTCTACACATGAAGGCCAAGGTAAAACTTGAAATTTACCTTTGTAAGCTTTTTCTTTTCCTAGCAGGTGCTGACTGTGTTCTTCTCTGTCAAAAAGGGGCTGTGGTTGGGGATCATATCTGCATTTGTTGTGCAAGTGTTATTTTACACAGTCTTCGTTATGAGAACAAAATGGGAGGAAGAGGCAAGCAAAGCTCAAGGCAGAGTTGA 1434 0.4344 MRRQRQEVVEEVKRQLWLALPLCSVGILQYSLQTMSVMFVGHLGTLPLSGASMATSFASVTGFNLLMGLASALDTFCGQSYGAGQYHMLGIHMQRSMLVVLIVSVFLAIIWANTEPILVAMHQDKAISREAGSYARFMIPSLFAYGLLQCLLKFLQNQNIVFPMVLTSGIIALLHILLCWVLVFKTRLGSRGAALSNSISYWVNVLLISLYVKFSPACKQTWTGFSVRALHNLLDFLKLAVPSALMLCLKVWTFEVIVLVSGLLPNPALETSVLSICLNTFGLAWMIPFGFSAAVSVRVSNELGAGNPQAASLAVQVVLSIAFIEGIFLASTMILLRNIWGHVYSNDKEVISYMSAMMPILAISSFLDGIQSALSGILAGCGRQKIGACVNLGSFYLVGVPCAVALAFLLHMKAKVKLEIYLCKLFLFLAGADCVLLCQKGAVVGDHICICCASVILHSLRYENKMGGRGKQSSRQS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0046 477 PANTHER PROTEIN DETOXIFICATION 1 417 - -
Lja4g0046 477 TIGRFAM matE: MATE efflux family protein 24 414 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja4g0046 477 CDD MATE_eukaryotic 11 415 IPR045069 GO:0042910|GO:1990961
Lja4g0046 477 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 417 - -
Lja4g0046 477 Pfam MatE 242 403 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja4g0046 477 Pfam MatE 21 181 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0046 Lja-Chr4 361444 364869 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0046 K03327 - gmx:100776083 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2159 2 24393507 24396336 Lja4g0046 4 361444 364869 ECH
Lja4g0046 4 361444 364869 Lja4g0046 4 361444 364869 ECH