Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2159 ATGGAGAGTGAACACCAAAAGGCATCTCTCCACTCTCCTTTGATTCAAAGCTCAAGGGCAACAACAGAAAGAAGAGAAGTTCTTGAAGAAGTTAAGAAGCAGTTATGGCTAGCAGGACCTTTAATATGTGTGAGTCTCCTAAATTATAGCCTAAATATCATATCCGTCATGTTTGTTGGACATCTCGGTGAGTTGGCTCTCTCTGGTGCTTCCATGGCCACTTCTTTTGCATCTGTCACAGGTTTCAGTTTCTTGGTAGGAATGGCAAGCGCCTTGGACACCTTATGTGGCCAGTCATATGGAGCAAAGCAGTATCAAATTTTAGGCATACACATGCAGAGGGCCATGTTCATTCTTATGATTGTAAGCATTCCACTTGCAGTTATTTGGGCAAACACAAGATCCATTCTTGTTTTCCTTGGCCAAGATCCTGAAATATCTACAGCAGCTGGGGAGTATGCCAAGTTAATGGTACCAAGTCTTTTTGGTTATGGTCTTCTGCAGTGCCTCAACAGGTTCTTGCAAACCCAAAATATTGTATTTCCAATGATGCTCATCTCAGGAGTGACTACGTCACTACACTTTTTAATATGTTGGATTATGGTATTCAAGTCTGGACTAGGGTACAGAGGGGCTGCTGTAGCAAATTCTATCTCTTATTGGGTAAATGTTTTCATACTCTCACTTTATGTCAAGTTTTCTCCCTCGCTTGCCATTCCTTCAGCTGCTATGATTTGCTTGGAAATGTGGTCGTTTGAAATGATGGTTCTCCTTTCCGGTATTCTTCCAAATCCAAAGTTGGAAACATCAGTGCTTTCTATCTGCTTGAATACAGCATCAACTGTTTGGATGATTCCTTTTGGACTCAGTGGATCTGTAAGCATTCGGGTCTCAAATGAACTTGGAGCTGGTCATCCACGTGCTGCACGTTTAGCAGTGTCTGTTGTCTCAGTCCTAGCCATTGTTGAGGGTAGCTTAGTTGCGACAGTGTTGATACTAATACGCAATATATGGGGCTATGCATATAGTAATGAAGTTGAAGTTGTCAAATATGTAGCAACTATGATGCCAATTCTTGCAATTTCCCACTTTATAGATGCATTCCAGAGCGTTCTTTCAGGAACTGCTAGAGGATGTGGTTGGCAGACAATTGGAGCATTTGTCAATCTGGGGTCATATTATTTAGTTGGAATTCCATCAGCTATTGTGTTAGCTTTTGTATTGCATCTTGGCGGCAAGGGTTTGTGGCTGGGGATCGTATGTGCACTCACTGTTCAACTAGTTTCTCTAATGATCATTACTACACGTACTGATTGGGAGCAAGAGGAAAAGAAGGCCACAGATAGAGTCTACGACTCAATAATTCCAGAGACCACAGTCTCATGA 1386 0.4206 MESEHQKASLHSPLIQSSRATTERREVLEEVKKQLWLAGPLICVSLLNYSLNIISVMFVGHLGELALSGASMATSFASVTGFSFLVGMASALDTLCGQSYGAKQYQILGIHMQRAMFILMIVSIPLAVIWANTRSILVFLGQDPEISTAAGEYAKLMVPSLFGYGLLQCLNRFLQTQNIVFPMMLISGVTTSLHFLICWIMVFKSGLGYRGAAVANSISYWVNVFILSLYVKFSPSLAIPSAAMICLEMWSFEMMVLLSGILPNPKLETSVLSICLNTASTVWMIPFGLSGSVSIRVSNELGAGHPRAARLAVSVVSVLAIVEGSLVATVLILIRNIWGYAYSNEVEVVKYVATMMPILAISHFIDAFQSVLSGTARGCGWQTIGAFVNLGSYYLVGIPSAIVLAFVLHLGGKGLWLGIVCALTVQLVSLMIITTRTDWEQEEKKATDRVYDSIIPETTVS* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2159 461 PANTHER PROTEIN DETOXIFICATION 17 236 - -
Lja2g2159 461 PANTHER PROTEIN DETOXIFICATION 237 449 - -
Lja2g2159 461 TIGRFAM matE: MATE efflux family protein 40 416 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2159 461 PANTHER MULTIDRUG RESISTANCE PROTEIN 17 236 - -
Lja2g2159 461 CDD MATE_eukaryotic 30 445 IPR045069 GO:0042910|GO:1990961
Lja2g2159 461 PANTHER MULTIDRUG RESISTANCE PROTEIN 237 449 - -
Lja2g2159 461 Pfam MatE 240 402 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2159 461 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2159 Lja-Chr2 24393507 24396336 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2159 K03327 - gmx:100815319 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2159 2 24393507 24396336 Lja4g0046 4 361444 364869 ECH
Lja2g2159 2 24393507 24396336 Lja2g2159 2 24393507 24396336 ECH