Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5231 ATGCAGCCTCAAGTTCACAATCAAGGGCAGCAGCATCCTATTCCGCCGGCTAATCAGCTCCAGTCACGCCAAATGCAAGGAAATCAGCATGTTGTTTCCAAACAACAACAACAGCCACAGCAGAACCTTCTACAATCAAATCAGTTGCAGTCTTCTGCTATGCAGCAGCACAATCAGCAATCAAATAATGTTCAACAGTCAACACAGTCCATGCATCAACAACACCCGCAAGTTATCAGGCACAAACAGCAGCCAAATACATTGCAACGAGATATGTGGCGAAGGCTTCAGGCATCAGGTTCTTTAACTCTACCACAAAGTGTTCTAGATCAACAAAAGCAGTTATGTCAGTCACAAAGACCCCTTCCAAAAATTTCATCAACTTCTCTGGATTCAACAACACAGACTGGACAGCCAAACGGGGGTGATTGGCAAGAAGAAGTGTATCAAAAGATCAAAACCATGAAAGAAAATTACTTGCCTGATTTGAATGAGTTGTACCAGAAAATTGGTACTAAACTTCAGCAGCATGATTCCCTTGCCCAACAATCAAAGTCAGATAAGCTTGAAAAGTATAAGTTATTTAAAATGATGTTGGAGCGCATGATATCATTCCTCCAGGTTTCCAAGAGCAACATTGCACCTAGTTTTAAGGAAAAACTAGGTTCATACGAGAAGCAGATTATAAATTTCATAAATATAAATAGACCTAGGAAAGGCATGTCTTCACTGCAGCATCCAGGACATCTCCCCCCACAGCATATGCATTCCATGTCACAGTCACATCCCCAAGTTACTCAAGTTCAGCCTCTTGAAAATCAAATAAACTCTCAGATGCAAACAACAAATATGCAAGGTTCTGTTGCTCCTGTTGTTTTAGTTTCATCAATATCACATGGTGCAAATATTGGACATCAACAAACAGGGTGTGCAGCCGTAGCTGCTCAATCCCTTGCCATTGGAACTTCTGGAATATCTGCCCCTCCTGAATCGGCAGAGTTCACTGGTCCAGATGGTGTTCATGGCAATTCTTTTCCACCCACTTTGGGAAAGTCAACTGTTTCTGAGCAGCCTCTTGATCGCCTAATTAAAGCGGTGAAATCATTGACACCTAATGCATTAAGTACTGCTGTCAGTGATATTGGTTCAGTTGTCAGCATGAATGATAGGATAGTAGGATCAGCTCCTGGTAATGGATCCAAAGCTGCTGCTGGTGCAGATTTGGTTGCCATGACTAATTGTCGCCTTCAGGCTAGGAATTTCATCAACCAAGATGGTGCCAATGGAACCAGGAGGATGAAACGCTGCACCCACGCTACACCCTTGAATGATGTATCATATGCTGGTTGCCTGAACAATAGTATCAAGCAGTTAGAAGCTTCTGATTTGGATTCAACTGCAACATGTATCAAGAAGCCTAGGATTCAGACTAATCATGCCCTTTTGGAAGAAATTAGGGAGGTTAATCAGCGACTTATCGACACAGTAGTTGACATAAGTGATGAAGAAATTGATCCAACTGCAGCTGCTGCATGCTTGTCCCTACAAGTCATCCTACCAGTTCCCCCATATTCCTAG 1578 0.4265 MQPQVHNQGQQHPIPPANQLQSRQMQGNQHVVSKQQQQPQQNLLQSNQLQSSAMQQHNQQSNNVQQSTQSMHQQHPQVIRHKQQPNTLQRDMWRRLQASGSLTLPQSVLDQQKQLCQSQRPLPKISSTSLDSTTQTGQPNGGDWQEEVYQKIKTMKENYLPDLNELYQKIGTKLQQHDSLAQQSKSDKLEKYKLFKMMLERMISFLQVSKSNIAPSFKEKLGSYEKQIINFININRPRKGMSSLQHPGHLPPQHMHSMSQSHPQVTQVQPLENQINSQMQTTNMQGSVAPVVLVSSISHGANIGHQQTGCAAVAAQSLAIGTSGISAPPESAEFTGPDGVHGNSFPPTLGKSTVSEQPLDRLIKAVKSLTPNALSTAVSDIGSVVSMNDRIVGSAPGNGSKAAAGADLVAMTNCRLQARNFINQDGANGTRRMKRCTHATPLNDVSYAGCLNNSIKQLEASDLDSTATCIKKPRIQTNHALLEEIREVNQRLIDTVVDISDEEIDPTAAAACLSLQVILPVPPYS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5231 525 MobiDBLite consensus disorder prediction 113 143 - -
Lja3g5231 525 MobiDBLite consensus disorder prediction 1 86 - -
Lja3g5231 525 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 82 290 - -
Lja3g5231 525 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 291 512 - -
Lja3g5231 525 MobiDBLite consensus disorder prediction 113 144 - -
Lja3g5231 525 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 82 290 IPR044661 GO:0003713|GO:0031490
Lja3g5231 525 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 291 512 IPR044661 GO:0003713|GO:0031490
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5231 Lja-Chr3 94554688 94561015 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5231 K14972 - lja:Lj3g3v0030810.1 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5231 3 94554688 94561015 Lja3g2173 3 25552047 25564534 PCT