Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2173 ATGGATTCCAATAACTGGAGACCTAATCAGGGTACTGAACCCGCTATCGCCGCGGGTGATTGGAGAGCTGAACTCCCACCTGATTCACGACTAAGAGTTGTCAACAAAATAATGGAAACATTACAAAAACATCTTCCGCCTAATAATTCTACGAGACCAGATGAACTTCGAGATGTTGCTCAAAGGTTTGAAGAGAAGATTTTTACTGGTGCAACAAGCCAGAATGATTATCTACGGAAAATTTCTATGAAGATGCTTACAATGGAGACTAGATCCCAAAATGCCATGGCCAATAATATGCCATCTAATCAAGTTGGCTCTAGCAGTAACCCTCCTGATCAAGGACTCATTTTGCAGCATCAAGTTCATAATCCAGGGCAGCAACATTCTATTCCTTTGCCTAGTCAGGCCCATCAACATCAGGAGCTTTTATCTCAAAACATTCAGAATACCGTTGCACCTCAACCTAACCTTCCACCAATATCTAGCCTAGCCCAAACTTCCAGCCAAAATATTGGTCAGAATTCCAACGTACAGAATATACCTGTTCAAAATTCAGTTGGTAGCAGCGCTATTATAGGCCAGAATTCCAACATACAAAATATGTTTTCTGGTTCTCAGAGGCAAATTGCAGGCGGGCAGCAGGTTGTTCCCCAACAGAAAGCGCAGAATCCACAACAGTATATCTACCAACAGCATCAGATTTTTAACCATAAGCTCCAGCTGCAGTCTCAGCCACACCCCCAACAACAGCAGAACCTTCTGCAATCAAATAAGCAATCTATTATGCAGCCTTCCATGATGCAAACATCTCTCCCCAGCCTTCCACAGAATCAACAATCTAATAATGTTCAACAGTCAACACAGTCCATGCTTCAGCAACAAGTTTTCAGGCATCAGCAACAACAGGCTTCTACTGTTCATCAGCAACAAACATCAATGACTCCACAACCGATCTTGCCTGTGCAGCAGCAGCAGCAACAGCTTATGGGGCCTCAGTCAATTGCAACAAACTTGCAACAACAAGCTCAGATGTTTGGACCACAGAGCAATGTTGGGGACATACAGCAACCACAGAGGTTACTTTCACAGCAGAATAATGTTACAAATTTGCAACAACGCCAGCAACATAAACAGTTAATAAATCAGCAAAACAATCTGACAAGTATACATCAGCAGCAGCTAGGAAATAATGTCCCTGGGTTACGGCAGCAACAGCTGCTTGGACCTGAATCTGGAAACCCAGGCATGCAAACAAGCCATCACTCTGTACACACAGTACAGCAACCAAAGGTCCCAATGCAGCAACAATCACAACAAAATGCATTGCCATCTCATGGGCAGCAATCACAGCCACAGGCTTCAGCGCAGCAATTAATGCCACAGATGCAACAGCAATTGGGTCTGCAGCCGCAGCCAAATCACTTACGAGAGATACAGCAAAGACTTCAAGCATCAGGGTCTTTACTTCAGCAAAATGCTTCTGATCAAAATAAAAAATTATATGAATCTCAAAGAGCTCTTCCAGAATCATCAACAACTTCTTTGGATTCGACAGCACAGATTGCACAGCCAAGTGGGGCTGATTGGCAAGAAGAAGTGTACCAAAAGATCCAAACCATGAAAGAAAATTACTTCACAGATGTGAGCGAATTGTACCAGAAAGTTGCTTTGAGACTTCAGCAGCATGACTCTCTTCTCCAACAACCGAGCTCAGATCAGAATCAGATTGAAAGACTGAGGAGATATAAAATGATGTTGGAGCATTTTATGACAATCCTACAGATTTCCAAGAACAGTATTTCACCTAGTATGAGGGGTAAAACAGATTCATATGAGAAGCAGATTGTAAGTATCCTCAGTCAACTTAGGCCTAGGAAAGGCATGCCTTTGCTGCAGTCCGGACAGCTTCCCTCAACTCATATGCCTTCCATGCCACAGCCACAGTCCCAAGTTACACAAGCACAGCCTCATGATAATCAAATAAACTCTCAGTTGCAGCCATCAAATAGACAAGGCTCTGTAACAACAACACAGCAGAATAATATTTCTGATTTGCAGCACAACTCAATATCTGGTGCATCAACCGCACAGCAGAGTATGATGAATTCAATGCGACCTGGTACTAATTTAGATTCTGTGCAAGGAAATTATGTTAACTCCCTGCAGCAGGTTCCAGTGAGCTCCCTTCAACAGAACCCTGTTAGTACTCCTCAACAAAATAACTTCAATTCCTTACCATCACAAGGTGGGGTAAATGTTATCCAACCGAATTCAAATACCCTTCAGTCAGGTTCCAGTATGCTTCAATACCAACTGAAACAACAACAGGAACAGCAAATGACGATTCCACAGCTCAAACAACAATATCAGCAGCAACAGTTGATGCAGAGGCAGCAGATCCTACAGCAGCAGCAGCAACTACACCAGCAGCCTGCAAAGCAACAGATGTCTGCACAATTGCAGTCACATCAAATGACTCAGCTTCACCAAATGAATGATATGAAAATGCGACAAGGAATGGGTTTCAAGCAAGGGGTCTTTCAACAACATCTTACCTCTGGTCAACAACACTCAGCTTATTCCCATCAAAAGTTGAAACAAGGGAGTTCGTTTTCTGCTTCTTCACCCCAACACCTTCAGGCTGCATCTCCTCAGATTTCACAACATTCATCTCCACAGGTTGACCAACAAAATAATCTTCCGTCTCTAACAAAAGTTGCAACTCCTCTACAATCTTCTAATTCACCTTTTGTGGCCCCTACTCCTTCACCCCCTATGGCTCCATCACCTATGCCAGCTGAACCTGAGAAGCCCATTTCTGGTCTTTCGTCAGTATCAAATGCTGCAAATGTTGGATATCAACAAACAGGCAGTGCAGCAGCACAAGCACATTCCCTTGCCATTGGGACGCCGGGGATATCCGCCTCTCCTTTGTTGGCAGAATTCAGTGGTCCAGATGGTGCTCCTGTTAATGCTTTAGCAGCTACTCCTGAGAAGTCAACTACAGAGCAGCCTCTTGAGCGCCTAATTAGAGCGGTGAAATCAATGTCAACTGCAACATTGACTGCTGCTGTCAATGATATTGGTTCAGTTGTCAGTATGAATGATAGGATAGCAGTATCATCTCCAGGTAATGGATCCAGAGCAGCTGTTGGTGAGGATTTGGCTTCCTTGATTAACTGTTGTGTTCGGGCTGGAAATTTTATTACTCAAGATGATAACAATGGAATTAAGAGGATGAAGCGCTGCACCGAGGCTGTACCCTTGAATGTTGTATCATCTTCTTGTAGCATGAATGATAGTGTCAAGCAGTTAAGTGCTTCAGAGGCTTCTGATCAAGAGTCAACTGCAACATCAAGTATCAAGAAGTTGAAGGTTGAGGTGAATCATGCACTTCTGGAAGAGCTAAGGAAAATTAATAACCGACTCATTGACACTGTAGTAGACATAAGTGATGAAGATGCTGATCAAACTGCAGTTGCTGAAGGGGCAGAAGGAACTGTCATCAAGTGTTCTTTTACTCCTGTGGCTTTTAGTCCGACCTTGAAATCCCAATATGCTTCAGGGCAGATGTCAACTATTCAGCCCCTGCGTTTGCTGATTCCGCCAAATTATCCAAATTGTTCTCCCATACTTCTTGATCAGTTTTCATTTGAATCCAGTGGGGAGAATGGAGATCTTTCAGTGAAGGCAAAGCTAAGGTTTAGCATATCCTTACGTAGTTTATCGGAACCGATGTCCCTTGGGGAGATAGTGAGGACTTGGGATGCTTGCGCTCGCAGTGTTATCTCTGAGTATGCACAACAGAGAGGTGGGGGAAGCTTCAGCTCTAGGTATGGAAGCTGGGATGCTGTTTCATGCTGA 3867 0.4368 MDSNNWRPNQGTEPAIAAGDWRAELPPDSRLRVVNKIMETLQKHLPPNNSTRPDELRDVAQRFEEKIFTGATSQNDYLRKISMKMLTMETRSQNAMANNMPSNQVGSSSNPPDQGLILQHQVHNPGQQHSIPLPSQAHQHQELLSQNIQNTVAPQPNLPPISSLAQTSSQNIGQNSNVQNIPVQNSVGSSAIIGQNSNIQNMFSGSQRQIAGGQQVVPQQKAQNPQQYIYQQHQIFNHKLQLQSQPHPQQQQNLLQSNKQSIMQPSMMQTSLPSLPQNQQSNNVQQSTQSMLQQQVFRHQQQQASTVHQQQTSMTPQPILPVQQQQQQLMGPQSIATNLQQQAQMFGPQSNVGDIQQPQRLLSQQNNVTNLQQRQQHKQLINQQNNLTSIHQQQLGNNVPGLRQQQLLGPESGNPGMQTSHHSVHTVQQPKVPMQQQSQQNALPSHGQQSQPQASAQQLMPQMQQQLGLQPQPNHLREIQQRLQASGSLLQQNASDQNKKLYESQRALPESSTTSLDSTAQIAQPSGADWQEEVYQKIQTMKENYFTDVSELYQKVALRLQQHDSLLQQPSSDQNQIERLRRYKMMLEHFMTILQISKNSISPSMRGKTDSYEKQIVSILSQLRPRKGMPLLQSGQLPSTHMPSMPQPQSQVTQAQPHDNQINSQLQPSNRQGSVTTTQQNNISDLQHNSISGASTAQQSMMNSMRPGTNLDSVQGNYVNSLQQVPVSSLQQNPVSTPQQNNFNSLPSQGGVNVIQPNSNTLQSGSSMLQYQLKQQQEQQMTIPQLKQQYQQQQLMQRQQILQQQQQLHQQPAKQQMSAQLQSHQMTQLHQMNDMKMRQGMGFKQGVFQQHLTSGQQHSAYSHQKLKQGSSFSASSPQHLQAASPQISQHSSPQVDQQNNLPSLTKVATPLQSSNSPFVAPTPSPPMAPSPMPAEPEKPISGLSSVSNAANVGYQQTGSAAAQAHSLAIGTPGISASPLLAEFSGPDGAPVNALAATPEKSTTEQPLERLIRAVKSMSTATLTAAVNDIGSVVSMNDRIAVSSPGNGSRAAVGEDLASLINCCVRAGNFITQDDNNGIKRMKRCTEAVPLNVVSSSCSMNDSVKQLSASEASDQESTATSSIKKLKVEVNHALLEELRKINNRLIDTVVDISDEDADQTAVAEGAEGTVIKCSFTPVAFSPTLKSQYASGQMSTIQPLRLLIPPNYPNCSPILLDQFSFESSGENGDLSVKAKLRFSISLRSLSEPMSLGEIVRTWDACARSVISEYAQQRGGGSFSSRYGSWDAVSC* 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2173 1288 MobiDBLite consensus disorder prediction 491 527 - -
Lja3g2173 1288 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 1 726 - -
Lja3g2173 1288 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 834 1286 - -
Lja3g2173 1288 MobiDBLite consensus disorder prediction 854 918 - -
Lja3g2173 1288 MobiDBLite consensus disorder prediction 919 936 - -
Lja3g2173 1288 Coils Coil 1134 1154 - -
Lja3g2173 1288 MobiDBLite consensus disorder prediction 270 315 - -
Lja3g2173 1288 MobiDBLite consensus disorder prediction 491 526 - -
Lja3g2173 1288 MobiDBLite consensus disorder prediction 854 944 - -
Lja3g2173 1288 MobiDBLite consensus disorder prediction 403 470 - -
Lja3g2173 1288 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 1 726 IPR044661 GO:0003713|GO:0031490
Lja3g2173 1288 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 834 1286 IPR044661 GO:0003713|GO:0031490
Lja3g2173 1288 SUPERFAMILY Kix domain of CBP (creb binding protein) 19 91 IPR036529 GO:0003712|GO:0006355
Lja3g2173 1288 MobiDBLite consensus disorder prediction 98 117 - -
Lja3g2173 1288 MobiDBLite consensus disorder prediction 633 678 - -
Lja3g2173 1288 MobiDBLite consensus disorder prediction 694 715 - -
Lja3g2173 1288 Pfam KIX domain 19 98 IPR036546 -
Lja3g2173 1288 Gene3D Coactivator CBP, KIX domain 20 99 IPR036529 GO:0003712|GO:0006355
Lja3g2173 1288 MobiDBLite consensus disorder prediction 627 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2173 Lja-Chr3 25552047 25564534 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2173 K14972 - gmx:100805336 1497.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5231 3 94554688 94561015 Lja3g2173 3 25552047 25564534 PCT