Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5217 ATGGAGTGCCCTGATTCCGACGCACAACCCAATTGGCGTAGTAGAAAGAAATCTGGTGTCTGGGAACACTTCACTGTGAAAAGTGATGAATCTGGATGTTCCAAGGCTTACTGTAAAAGTTGCAAAAAACCATTCGCTTATATCAATGGTTCAAAGCAATCTGGAACCAGCCATCTGAGGAGACACATTTCTCTGGGAATCTGTCAGAAAAATCAACAAACCCTGTGCTCCAAAACTGGTGCTGATCCACCAAAGAAGAAACGAGCAAGAGCGAAAGTTGCTGCTATTTCATTTGATCAGGAGCGCTGCAACGATAAGATAGCTAAAATGATTATTTTGCATGACTATCCACTTCATATTGTAGAACACCGAGGTTTCATTGATTTTGCGCGGGCACTTCAACCACAGTTCAACCCGCTGAGTTTAAATGCTGTCCAAGAGGATTGTGTTGCCATATACCTCAGAAAGAAGCAAAACCTGCTGAAACTTATTGATGGGATTCCTGGACGAGTCAACCTTACCTTGGACTTATGGACTTCAGATCAGACATCAGCCTATGTTTTTCTTCGAGGTCACTTTGTTGATTGTGATTGGAACTTACATCATCCCATTCTTAGTGTTCTGAAGATGCCTTTTCCTGATTCTGGTGGTTCCCTAAATCAATCCATAAACACCTGCCTACATGACTGGCATTTGGAGGGTCGGATATTTACTCTTGTGCTTGATAAATTCTTCTTCAGTGAGACTTTGATTGGAAATCTGAGAGGTCTTTTCTCTATTAAGAACCCTGAGATCCTCAATGGTCAGTTATTAAGCCAGAACTGTTATTCTCGTGTGCTTACTCGCCTTGCATCAGATGCGCTTTGGGCAATGAGAGAAACTATTGACAAAGTTCGCAAGAGTGTGAAGTATGTGAAATCTTCTGAATCTCGTGAACAGAAGTTTCTCAAGCTGAGGCAAAAGCTTCAACTTTCCAGTAAGAGCAACCTTTTAATTGATGACCAAACTAAGTGGGATACAGTTTACCACATGCTTGTTGCTGCCTGTGAATTAAAGCAAATCTTTTGCTGCTTTGGTGTCGGTGATCCTGATTGCAGAATGACTCTAAAATTAGATGACTGGAAGCAGGTGGAAATTCTTTGCACATATCTAAAGTGTTTGTATGATGCAGCAAACATTTTAACTGTGCAACCATACCCAACTGCCAACTTATTTTTTCCTGTAGTATCAAAGCTTCAGGTGGAGTTCACTCATGCATCCCTAAGCCAGGATGCTTTTTGTCGTAATTTGATCATGCCTTTGCAAGAAAAGTTTGACCAATATTGGAGAGAAAACTGTTTCGTCTTGGCAATTGCTGCTGCGATGGATCCAAGGTATAAAATGAAAATTGTTGAGTCCACCTTTGCTAACATCTATGGAGAGAATGCTGAGCTATGGATAAGAATTGTTGAGAATGGACTTCATGAGATATTCCTTGAATATAATAGTGTAGATGTGCTTTCTTTGACCCCATCAAATGGGGATGAAGGGGATGAGTCTATAACAATGAAGACGGACCCTTTTCAAAAAGGGTCATTGGAGACTAAGCCATTTCAGTTTCAGTCAGGGTCATTTGAGATTGAGCCATTTCCAGAAGGGTCATTTGATTTTGATGGATCTCCTTTTGATGCTGAAGATGGACTTCCTGATATTGAATTTTACATATCTGATTTCATTAGTAACCCATCATTCAAGTCAGAATTGAGTGAGTATTTGGAAGAGCCTCTAGAGCCAAGAGTACCAGACTTTGATATTCTGAGATGGTGGAGAATAAATGCATTGAAGTACCCAACATTATCTAGAATGGCATCAGATATTTTGTCTATCTCTGCATCTACTCTCCCTGCAAGTTCTGTTTTTGATACAGAAATTAGGAAAATGGATAGCTATCGGAGTTCATTAGACTCTCCTACTCTTGAGGCCCTAATTTGTACCAAGGACTGGTTCCGGTATGAATCATTACCAATCAATGTTTCAAATGATCTTGTGAAAGTGGAATATTAG 2043 0.4023 MECPDSDAQPNWRSRKKSGVWEHFTVKSDESGCSKAYCKSCKKPFAYINGSKQSGTSHLRRHISLGICQKNQQTLCSKTGADPPKKKRARAKVAAISFDQERCNDKIAKMIILHDYPLHIVEHRGFIDFARALQPQFNPLSLNAVQEDCVAIYLRKKQNLLKLIDGIPGRVNLTLDLWTSDQTSAYVFLRGHFVDCDWNLHHPILSVLKMPFPDSGGSLNQSINTCLHDWHLEGRIFTLVLDKFFFSETLIGNLRGLFSIKNPEILNGQLLSQNCYSRVLTRLASDALWAMRETIDKVRKSVKYVKSSESREQKFLKLRQKLQLSSKSNLLIDDQTKWDTVYHMLVAACELKQIFCCFGVGDPDCRMTLKLDDWKQVEILCTYLKCLYDAANILTVQPYPTANLFFPVVSKLQVEFTHASLSQDAFCRNLIMPLQEKFDQYWRENCFVLAIAAAMDPRYKMKIVESTFANIYGENAELWIRIVENGLHEIFLEYNSVDVLSLTPSNGDEGDESITMKTDPFQKGSLETKPFQFQSGSFEIEPFPEGSFDFDGSPFDAEDGLPDIEFYISDFISNPSFKSELSEYLEEPLEPRVPDFDILRWWRINALKYPTLSRMASDILSISASTLPASSVFDTEIRKMDSYRSSLDSPTLEALICTKDWFRYESLPINVSNDLVKVEY* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5217 680 Pfam hAT family C-terminal dimerisation region 580 662 IPR008906 GO:0046983
Lja3g5217 680 ProSiteProfiles Zinc finger BED-type profile. 15 75 IPR003656 GO:0003677
Lja3g5217 680 SUPERFAMILY Ribonuclease H-like 158 664 IPR012337 -
Lja3g5217 680 Pfam Domain of unknown function (DUF4413) 397 494 IPR025525 GO:0003677
Lja3g5217 680 SUPERFAMILY beta-beta-alpha zinc fingers 18 66 IPR036236 -
Lja3g5217 680 PANTHER BED FINGER-RELATED 5 669 IPR045259 -
Lja3g5217 680 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 5 669 - -
Lja3g5217 680 SMART bed5 15 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5217 Lja-Chr3 94456152 94458194 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5217 - - gmx:106796308 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5217 3 94456152 94458194 Lja3g5217 3 94456152 94458194 ECH
Lja3g5217 3 94456152 94458194 Lja3g2159 3 25299927 25301986 PCT