Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2159 ATGCAGCGGAAGAGAAATAATTCTATTGTTTGGGAATACTTCACAGAGGAAGCTGTTGGAGCTGGATGTACTAGGGCTTACTGCAAAAGACACATTTATTTTGGAATTTGTAAAATGGCTCAGCAGAAAAATCAAGAGAGCTCATATACGAAAACTGGTGGTTCTCGAGATACCGTCAATCGTCTGAAGAAACGACCAAGAACAACACCTGTTGGTAATGGTATCTCATTTGATCAGGAGCGATGCAACCAAGACATTGCTAAAATGATTATTTTACATGATTATCCTCTTCATATCGTGGAACAACAGGGTTTCATTGATTTTGCGCGCATTCTTCAACCCCAGTTCAATCCACTATGTTTAAAATCTATTGAAGCAGATTGTGTTGCTATATACCTCAAGGAGAAGCAAAATCTTTTGAATTTTATCAATGGGATTTCTGCTCGAGTCAACCTGACATTGGACTTATGGACGTCAAACCAGACAACGGTATATGTTTTTATTCGAGGACACTTCATTGATCGTGATTGGAACTTACATCATCCTATTCTCAATGTCTTTATGGTACCATTTCCTGATTCTGATGATTCCTTAAGTCAAATTATACAGACTTGCCTATCTGATTGGCTCTTGAAGGGTCGTCTATTTACCCTTGCACTTGATAAATCCTTCTCAAGTGAGACTGTGGTGGGAAATCTGAGAGGACTTCTGTCTGTTAAGAACTCTGTGATTCTCAATGGCCAGTTATTAAACCAGAATTGTTATGCCCATGTTCTTAGTCATCTTGCGGTAGATGCATTACAGACAATGGGAGAAACTATTAGCAAAGTTCGTGAGAGTGTGAAATATGTGAAATCTTCTGAATCTCATGAAAAGAAGTTTCTTGAGCTGAAGCAACAACTACAAGTACCTAGTATGATGAAGCTCTTAATTGATGACCAGTGTAAATGGGACACAACATACCATATGCTTGTAGCTGCTTGTGAATTAAAGGAGGTCTTTGCATGCTTTGATGCCACTGATCCTAATTATACAATGACTTTCACTATGGATGACTGGAAGCAAGTTGAAACTCTCTGCACATATTTGAAGTATTTGTATGATGCGGCTAATATTGTAGCTTCTCAACTATACCCAACTGCAAACATCTTTTTTCTTGAAGTGTCAAAACTTCAGGTGGAGTTAGCTGATGCAGCCTTCTGCCAGGATCCTTTCCTTAGTAATTTGATTTTGCCTTTACATAAGTACTTCGATCAATATTGGAGAGAAAGTTGTCTCATCTTAGCAATTGCTGTAGCCATGGACCCAAGATATAAAATGAATTTTGTGGAATTAACCTTTTCCAAGATATTTGGTGAGGATGCCAAGTCATGGTTAAGAGTAGTGGATGATGGTCTTCGTGAGTTATTCTTTGAATACAACTCTTTCATGCTTCCTTTTACAGCTTCAAATGACTATGAAGAAGATGGGATTACGTTGAAGACAGAGGCATACCAAGAAGGGTCAATCGATGGTTCTATCTTTGTTGATGAGGATAAACTTTCTGACTATGAATGTTATATATCTGATTTTACTGGTATCCAGCAATATAAGTCAGAATTGGATGAGTATCTAGAAGAGCCTCTTCTTCCCGGGGTAGAAGAATTTGATATTTTGAGCTGGTGGAGAGAAAATGGATTGAGGTATCCAACATTGTCCAGAATTGCATCTGATGTTTTGTCAATTCCAATATCAACTGTGTCTGCAGAGTTTGTTTTTGATACTGAAATTAGAAAAATGGATAGCTACCGCAGTTCGTTAGGCTCACTCACCCTTGAGTCCCTTATTTGTGCTAAGGATTGGTTCCAGAGTAAATGTTTACCCATTGATGTTTCAAATGCACTTCCTAAGATGGGATTTTAG 1902 0.3817 MQRKRNNSIVWEYFTEEAVGAGCTRAYCKRHIYFGICKMAQQKNQESSYTKTGGSRDTVNRLKKRPRTTPVGNGISFDQERCNQDIAKMIILHDYPLHIVEQQGFIDFARILQPQFNPLCLKSIEADCVAIYLKEKQNLLNFINGISARVNLTLDLWTSNQTTVYVFIRGHFIDRDWNLHHPILNVFMVPFPDSDDSLSQIIQTCLSDWLLKGRLFTLALDKSFSSETVVGNLRGLLSVKNSVILNGQLLNQNCYAHVLSHLAVDALQTMGETISKVRESVKYVKSSESHEKKFLELKQQLQVPSMMKLLIDDQCKWDTTYHMLVAACELKEVFACFDATDPNYTMTFTMDDWKQVETLCTYLKYLYDAANIVASQLYPTANIFFLEVSKLQVELADAAFCQDPFLSNLILPLHKYFDQYWRESCLILAIAVAMDPRYKMNFVELTFSKIFGEDAKSWLRVVDDGLRELFFEYNSFMLPFTASNDYEEDGITLKTEAYQEGSIDGSIFVDEDKLSDYECYISDFTGIQQYKSELDEYLEEPLLPGVEEFDILSWWRENGLRYPTLSRIASDVLSIPISTVSAEFVFDTEIRKMDSYRSSLGSLTLESLICAKDWFQSKCLPIDVSNALPKMGF* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2159 633 Pfam hAT family C-terminal dimerisation region 533 615 IPR008906 GO:0046983
Lja3g2159 633 Pfam Domain of unknown function (DUF4413) 376 473 IPR025525 GO:0003677
Lja3g2159 633 PANTHER BED FINGER-RELATED 2 620 IPR045259 -
Lja3g2159 633 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 2 620 - -
Lja3g2159 633 SUPERFAMILY Ribonuclease H-like 148 616 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2159 Lja-Chr3 25299927 25301986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2159 - - lja:Lj3g3v2185860.1 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2159 3 25299927 25301986 Lja3g2159 3 25299927 25301986 ECH
Lja3g5217 3 94456152 94458194 Lja3g2159 3 25299927 25301986 PCT