Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5215 ATGGTTCTAGCGCAGTTAGGGGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCCACGGTGATCGACGAGAAGGTCCTCAACGAATGCCTCAAGGAGATCACTCGAGCTCTTCTTCAATCCGATGTTCAATTCAAGCTCGTCGCCGACATGCAGACCAACATCAAGAAGATTGTCAACCTTGACCATCTCGCCGCCGGTCACGACAAACGCAAGATCATCCAACAAGCTGTGTTTAATGAGCTCTGCAAAATGCTGGATCCTGGGAAGCCCTCTTTCGCTCCCAAGAAAGGAAATACAAGTGTGGTCATGTTCGTTGGTTTACAAGGTTCTGGAAAAACTACAACCTGTACAAAATATGCACATTATCATCAGAAGAAAGGATGGAAGCCAGCTCTAGTTTGTGCAGATACATTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCCGCTAAAGCTAAGATCCCTTTCTACGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACAAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAATTTCGGAAGCAACGAACCCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGCCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTCGCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCCAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAGGTTGAAGTTTTTGATGTTAAGCCGTTCGTTAGTCGTCTATTAGGCATGGGTGACTTGTCTGGGCTTATGGACAAAATTCATGGAGTTGTTCCTAGGGATCAACAGCCTGAACTGCTTGAGAAGCTGTCAGAAGGACACTTCACATTGAGGATGATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTCTAAACCAGGTGTTTTCTATGCTTCCAGGATTTAGTGCTGAACTAATGCCCAAAGGCAGTGAGAAAGAAGGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGATTCAATGACAAACAAAGAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGTATTTTGCGAATAGCTCGAGGTTCTGGTCATCAAGTTAGGGAAGTGATGGAGATGTTGGAAGAATACAAGCGTTTGACAAAGATGATATGGAGCAAAATGAAAGGGCTCAAGACATCAAAGAAGGGTGATATGAGTGCCCTGTCGAGAAATATGAATGCTCAGCAAATCATGAACTTGATGAAGCAGATGGGATCTACAAAAGACATGATGGGAAGGTTTGGCGGTGGTGGTAATTAG 1437 0.4398 MVLAQLGGSISRALQQMSNATVIDEKVLNECLKEITRALLQSDVQFKLVADMQTNIKKIVNLDHLAAGHDKRKIIQQAVFNELCKMLDPGKPSFAPKKGNTSVVMFVGLQGSGKTTTCTKYAHYHQKKGWKPALVCADTFRAGAFDQLKQNAAKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQISEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEVEVFDVKPFVSRLLGMGDLSGLMDKIHGVVPRDQQPELLEKLSEGHFTLRMMYEQFQNILKMGPLNQVFSMLPGFSAELMPKGSEKEGQAKIKRYMTMMDSMTNKELDSSNPKLMNESRILRIARGSGHQVREVMEMLEEYKRLTKMIWSKMKGLKTSKKGDMSALSRNMNAQQIMNLMKQMGSTKDMMGRFGGGGN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5215 478 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Lja3g5215 478 SUPERFAMILY Signal peptide-binding domain 298 429 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lja3g5215 478 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 448 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lja3g5215 478 Pfam Signal peptide binding domain 328 428 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lja3g5215 478 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Lja3g5215 478 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 428 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Lja3g5215 478 CDD SRP54_G 102 294 - -
Lja3g5215 478 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Lja3g5215 478 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lja3g5215 478 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Lja3g5215 478 Gene3D - 5 306 IPR042101 -
Lja3g5215 478 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 477 - -
Lja3g5215 478 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Lja3g5215 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Lja3g5215 478 Gene3D - 312 440 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lja3g5215 478 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 93 IPR036225 -
Lja3g5215 478 SMART AAA_5 100 277 IPR003593 -
Lja3g5215 478 Gene3D - 91 285 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5215 Lja-Chr3 94444170 94449125 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5215 K03106 - rcu:8282364 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5215 3 94444170 94449125 Lja3g5215 3 94444170 94449125 ECH
Lja3g5215 3 94444170 94449125 Lja3g2158 3 25286280 25291190 PCT