Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2158 ATGGTTCTTCAACAGTTAGGCGGGAGCATTTCCCGTGCTCTTCAGCAGATGAGCAATGCCACAATCATCGATGAGAAGGTTCTCAACGAATGCCTCAACGAGATCACTCGCGCTCTTCTTCAATCCGATGTGCAATTCAAGCTCGTCCGCGATATGCAGACCAATATCAAGAAGATTGTCAATCTGGAGGATCTCGCTGCGGGACACAACAAGCGCAGGATCATCCAGCAAGCTGTGTTCAATGAACTCTGCAAAATCCTGGATCCTGGAAAGCCGGCTTTTACTCTCAAAAAAGGAAAACCAAGTGTTGTCATGTTTGTTGGTTTACAAGGATCTGGAAAAACCACAACTTGTACGAAATATGCATATTATCATCAAAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCAGATACATTTAGAGCTGGTGCATTTGATCAGTTGAAGCAAAATGCCACCAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCAGATCCTGTGAAAATTGCTGAGGAAGGTGTTGAAAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGACACCAGTGGGAGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGACAGCAGTATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTGGGAGCTGTCATCATCACTAAAATGGATGGCCATGCAAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAGCAACTAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAACCGTTTGTTAGTCGTCTATTAGGCATGGGAGATTTGTCTGGGTTCATGGACAAAATTCAGGAAGTTGTTCCTATGGATCAACAGCCTGAACTGCTTCAAAAGCTGTCAGAAGGAAACTTTACCTTAAGGATTATGTATGAGCAGTTTCAAAACATACTTAAAATGGGTCCTATCGGTCAGGTATTTTCTATGCTACCAGGATTTAGTTCTGAATTAATGCCAAAAGGCCGTGAGAAGGAAAGTCAAGCCAAAATTAAGCGTTACATGACAATGATGGACTCAATGACAAACGAAGAGTTGGATAGCTCAAACCCAAAAATGATGAATGAGTCAAGAATGATGCGAGTAGCTCGAGGTTCTGGTCGTCAGGTTAGGGAAGTAATGGAAATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGACTTAAAATACCAAAGAAGGGCGATATGAGTGCCTTATCCCGAAATATGAATGCCCAGCACATGAGCAAAGTCCTCCCTCCACAAATGCTAAAGCAAATAGGAGGCATGGGTGGATTGCAAAGCTTGATGAAACAGATGGGATCTGGTAAGGACATGATGGGAGGCATGGGTGGAATGTTTGGCGGTGGTGGTGATAAGTAG 1503 0.4265 MVLQQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLEDLAAGHNKRRIIQQAVFNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAEEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIQEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKMMNESRMMRVARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSGKDMMGGMGGMFGGGGDK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2158 500 Gene3D - 5 306 IPR042101 -
Lja3g2158 500 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lja3g2158 500 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Lja3g2158 500 CDD SRP54_G 102 294 - -
Lja3g2158 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Lja3g2158 500 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 494 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lja3g2158 500 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Lja3g2158 500 Pfam SRP54-type protein, GTPase domain 101 296 IPR000897 GO:0005525|GO:0006614
Lja3g2158 500 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lja3g2158 500 Gene3D - 308 452 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lja3g2158 500 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Lja3g2158 500 Gene3D - 91 285 IPR027417 -
Lja3g2158 500 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 499 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lja3g2158 500 SMART AAA_5 100 277 IPR003593 -
Lja3g2158 500 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 92 IPR036225 -
Lja3g2158 500 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 499 - -
Lja3g2158 500 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Lja3g2158 500 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2158 Lja-Chr3 25286280 25291190 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2158 K03106 - ming:122079853 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2158 3 25286280 25291190 Lja3g2158 3 25286280 25291190 ECH
Lja3g5215 3 94444170 94449125 Lja3g2158 3 25286280 25291190 PCT