Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5183 ATGGCAGCGGTGCAGCGGCTAGCGTGGCGTTTCCGCCCGGCTCCGCCGCTCATGTTCGCACTCGCCAACGGCGTCGCAACACCCTCAGCTTGTAGTAGCAGCACCAGCACCGCAGAATCAGCATCGAGCTCGAAACAATGCAGGCCCTTCAACTCCACAGCATCATCTTCTTCTTCTTCTTCATCATCAAAGGCAGGTTGGTTTTCGGGTCTGACATTGCCGAAGGTTGTGAAAGCTGGAGATCCCGTTCTGCACCAGCCTGCACGTGAAGTTGATCCCAGTGAGATGAAGTCGGAGAAGGTGCAGAAGATCATCGATGACATGATCCGTGTCATGAGGAATGCACCTGGTGTTGGTCTCGCTGCCCCACAAATTGGACTTCCCTTCAGGATAATTGTTTTGGAAGATAAAAAAGAATATATGGGTTACGACACAAAGGGAGAGATCAAACCACAAGAGATAAAAGCACAAGTTGAAGCAGAAATCAAAGCACAGGACAGAAGGCCTTTTGATCTTTTGGTGATCCTGAATCCTAAACTAGAGAAGAAGAGCAACAGGACTGCACTGTTTTTTGAAGGGTGCTTGAGTGTCTCAGGATATAGTGCTGTGGTAGAGAGGTACCTTGACGTTGAGGTTACAGGTTTTGATCGCGATGGTGAACCCATCAAAATAAAAGCTTCAGGTTGGCAGGCCCGGATTTTGCAACATGAGTGTGATCACCTAGATGGAACACTGTATGTTGATAAGATGTTACCAAATACTTTCAGAACTTCAAGAAACTGGGATATGCCTCTTGCCCCTGGGTGCCCCAAACTTGGCCCCCGCTAA 828 0.4879 MAAVQRLAWRFRPAPPLMFALANGVATPSACSSSTSTAESASSSKQCRPFNSTASSSSSSSSSKAGWFSGLTLPKVVKAGDPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAPGVGLAAPQIGLPFRIIVLEDKKEYMGYDTKGEIKPQEIKAQVEAEIKAQDRRPFDLLVILNPKLEKKSNRTALFFEGCLSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQHECDHLDGTLYVDKMLPNTFRTSRNWDMPLAPGCPKLGPR* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5183 275 Gene3D Peptide deformylase 72 272 IPR036821 -
Lja3g5183 275 Hamap Peptide deformylase [def]. 72 264 IPR023635 GO:0042586
Lja3g5183 275 Pfam Polypeptide deformylase 75 252 IPR023635 GO:0042586
Lja3g5183 275 SUPERFAMILY Peptide deformylase 72 256 IPR036821 -
Lja3g5183 275 MobiDBLite consensus disorder prediction 30 65 - -
Lja3g5183 275 PANTHER PEPTIDE DEFORMYLASE 47 275 - -
Lja3g5183 275 CDD Pep_deformylase 76 246 IPR023635 GO:0042586
Lja3g5183 275 PANTHER PEPTIDE DEFORMYLASE 47 275 IPR023635 GO:0042586
Lja3g5183 275 PRINTS Peptide deformylase signature 204 222 IPR023635 GO:0042586
Lja3g5183 275 PRINTS Peptide deformylase signature 106 135 IPR023635 GO:0042586
Lja3g5183 275 PRINTS Peptide deformylase signature 192 203 IPR023635 GO:0042586
Lja3g5183 275 PRINTS Peptide deformylase signature 223 252 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5183 Lja-Chr3 94134104 94137143 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5183 K01462 - pvy:116121685 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5183 3 94134104 94137143 Lja3g5183 3 94134104 94137143 ECH
Lja3g5183 3 94134104 94137143 Lja3g2130 3 24929165 24932470 PCT