Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2130 ATGGAGGCCTTGCACATGCAGCGTGTACTTCCCATATCTGCTGCCCAAAACACTCTCTTTACGCGCCCAACTGCCACCCCATTATCTGGAGTTGCAATGGCAAGGCCACCATTGAGTTTAAGCTTATCATCTTCTTCTCAAGCTGCCGCTGCCACTGCCACTGCAAGAGCAGGGTGGTTTTTGGGTCTAACAGCAGATAACAAGAAGATGAAATTGCCTGACACTGTCAAAGCTGGTGACCCTGTTCTTCATGAGCCTGCCCAGGAAGTTAATCCCAGTGAGATAAAGTCGGAGAGAGTGCAGAAGATCATTGATGACATGATCCGGGTCATGAGGAATGCTCCTGGGGTTGGTTTAGCTGCTCCCCAGATTGGAGTTCCTTTAAGGATAATAGTTGTGGAAGATACCAAAGAGTATATTAGTTATGCCCCAAAGGAAGAGACAAAAGCTCAAGATAGAGTGCCTTTTGATCTTTTGGTGATCCTGAATCCCAAGCTAGAGAAGAAGAGCAACAGAACTGCCCTATTTTTTGAAGGGTGCTTGAGTGTTGATGGATTTAGAGCAGTGGTGGAGCGACATCTTGACGTTGAAGTTACAGGTTTAGATCGCTACGGTGCGCCAATCAAAATAAATGCGTCGGGTTGGCAGGCTCGGATTTTACAACACGAGTGTGATCACTTGGATGGCACTTTGTATGTTGATAAGATGGTACCTAGAACTTTTAGAACTGTGGACAACTTGAACCTCCCCCTTGGCCAGGGGTGCCCCAAACTTGGTCCTCGCTAA 786 0.472 MEALHMQRVLPISAAQNTLFTRPTATPLSGVAMARPPLSLSLSSSSQAAAATATARAGWFLGLTADNKKMKLPDTVKAGDPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPLRIIVVEDTKEYISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNLNLPLGQGCPKLGPR* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2130 261 CDD Pep_deformylase 76 232 IPR023635 GO:0042586
Lja3g2130 261 Gene3D Peptide deformylase 70 259 IPR036821 -
Lja3g2130 261 PRINTS Peptide deformylase signature 105 134 IPR023635 GO:0042586
Lja3g2130 261 PRINTS Peptide deformylase signature 178 189 IPR023635 GO:0042586
Lja3g2130 261 PRINTS Peptide deformylase signature 209 238 IPR023635 GO:0042586
Lja3g2130 261 PRINTS Peptide deformylase signature 190 208 IPR023635 GO:0042586
Lja3g2130 261 PANTHER PEPTIDE DEFORMYLASE 8 261 IPR023635 GO:0042586
Lja3g2130 261 SUPERFAMILY Peptide deformylase 65 244 IPR036821 -
Lja3g2130 261 Pfam Polypeptide deformylase 76 239 IPR023635 GO:0042586
Lja3g2130 261 PANTHER PEPTIDE DEFORMYLASE 8 261 - -
Lja3g2130 261 TIGRFAM pept_deformyl: peptide deformylase 76 238 IPR023635 GO:0042586
Lja3g2130 261 Hamap Peptide deformylase [def]. 71 247 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2130 Lja-Chr3 24929165 24932470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2130 K01462 - gmx:100784292 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2130 3 24929165 24932470 Lja3g2130 3 24929165 24932470 ECH
Lja3g5183 3 94134104 94137143 Lja3g2130 3 24929165 24932470 PCT