Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5168 ATGAGTCATGCACATCCCCACATGGGTTCTGGTAGTAGAACTGCTCGAAGAGCTTTTGAGTTTGGGAAGACACATGTAGTGAGGCCTAAAGGAAAACATCAAGCCACTATTGTTTGGCTGCATGGCCTTGGTGATAATGGTTTGAGCTCATCTCAATTGCTGGAATCTCTTCGACTTCCAAATATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTGGCATTACTTGGTGGTTTTCCCTGCACTGCATGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCCGATGACTGGGAGGGTTTAGATGCTTCAGCAGCACATATTGCTAATTTATTGTCAACGGAGCCAGCTGATGTAAAAGTTGGCATTGGAGGCTTCAGCATGGGTGCAGCAATATCACTATACTCTGCAACATGTTTTGCCATGGGAAGGTATGGAAATGGCATCCCATACCCTGTCAACTTAAGAGCAGTTGTTGGACTAAGTGGCTGGCTTCCAGGATCAAGGAGCTTAAGGAACAAGATAGAAGTGTCACATGAAGCAAGAAGGCGAGCAGCTTCATTGCCCATTTTGCTGTGCCATGGAACGAGTGATGATGTAGTCCTCTGCAAATATGGAGAGAAATCTGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTGCATTCAAATCCTATGAAGGGCTTGGTCATTACACAGTTCCTAGAGAGATGGATGAGATTTCCACCTGGCTTAGTTCAAGGCTAGGGCTTGATGGAACCTCGTAA 771 0.4565 MSHAHPHMGSGSRTARRAFEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSSQLLESLRLPNIKWICPTAPTRPVALLGGFPCTAWFDVGELSEDGPDDWEGLDASAAHIANLLSTEPADVKVGIGGFSMGAAISLYSATCFAMGRYGNGIPYPVNLRAVVGLSGWLPGSRSLRNKIEVSHEARRRAASLPILLCHGTSDDVVLCKYGEKSAQSLSSAGFRYIAFKSYEGLGHYTVPREMDEISTWLSSRLGLDGTS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5168 256 Pfam Phospholipase/Carboxylesterase 24 247 IPR003140 GO:0016787
Lja3g5168 256 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 255 - -
Lja3g5168 256 Gene3D alpha/beta hydrolase 15 251 IPR029058 -
Lja3g5168 256 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 255 - -
Lja3g5168 256 SUPERFAMILY alpha/beta-Hydrolases 25 250 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5168 Lja-Chr3 94031247 94036082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5168 1 255 Acyl Lipid Metabolism Gene Families AT3G15650 74.340 2.01e-132 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5168 K06130 - gmx:100798395 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2120 3 24828290 24831379 Lja3g5168 3 94031247 94036082 ECH
Lja3g5168 3 94031247 94036082 Lja3g5168 3 94031247 94036082 ECH
Lja3g5168 3 94031247 94036082 Lja3g2120 3 24828290 24831379 PCT