Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5159 ATGAAGAAGCAGGGTTGTGAAGAATCACTTCCAGAAAGAAGTCCAAGCCACTTATCCTCAGAATGCTGGTTCGACGATGCATGCATACTTGACATGGATTACTTCGTGAAGACACTCTCAGGCATCAAACAGAAAGGTGTTCGTGCTGACTTGGTTGGTTCCATCATCACTCACTACGCTTCAAAATGGCTCCCAGACATCTCTTCAGCTGAAAATGGCCTCACACAACAGCAGTTTGAGTCGTCCACAGCATCACCTGAATCTGTGACAGCATCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTTGGTGTTCTGCCTCCTGAGAAGGACTCCATCCCCTGCAACTTCCTCCTCCGTCTTCTCCGAGTCGCCAACATGGTTGGTGTTGAGGCCTCTTACCGGCAAGAGCTCGAGAAGCGCATATCGTGGCAGCTAGACCAGGCTGCAATCAATGAGCTCATGATTCCCTCTTTCAGTCACACTTGTGGGACACTCCTTGATGTTGAGCTTGTCATAAGGTTGGTGAAGAGATTTGTGAGCTTGGACCATGAAGGAGCTAAAACTGGTGCTGCTTTGGTTAAGGTGGCTAAGCTTGTTGATTGCTACCTTGCTGAGGCTGCTATGGATGCCAATTTGAGCTTATCTGAGTTTGTTGCACTTGCTGGAGCTCTTCCAAGCCATGCAAGAGCTACTGATGATGGATTGTATAGAGCCATTGACACTTATCTAAAAGCACATCCAAGCGTGTCAAAGCAAGAAAGGAAAGGACTATGTAAGCTGATTGATAGCCGGAAATTGACGCCAGAGGCCTCACTTCATGCAGCTCAAAATGAAAGGTTTCCAGTAAGAGCTGTCATTCAGGTGCTCTTCTCTGAACAAACCAAACTCAATCGCCACATGGATTGGAGTAGCTCTTTCAGCAGCTTGAGGAGCCCGAATGGCAGGTTCGACCAGCCGACACGGTGTCTTTCAAAGCGTGAAATGAATGTTCAGCAGATGGAGATAAAGAAGCTGAAGGAAGAGGTTTACAGGCTGCAAAGCCAGTGCAATGCCATGCAAATGCAGATGGAGAGGATGTCAGAGAAGAAGAGTGGAAGAAGCTTCTTCAAATGGAAGAAGCTTGGGATGGCAGCGTTTAGTAAAGGCACGGGAGAGGTGGAGGATGACCAGGAAGAGGGTGAAAGGGAAGTTGGGTTTGGAAGGCAAACGCCTATGGACATGAAATCTGGGCTGGTCAAATGTAGGACTCCCCACAAGTTGAGGAAATCTATGTCCTGA 1284 0.479 MKKQGCEESLPERSPSHLSSECWFDDACILDMDYFVKTLSGIKQKGVRADLVGSIITHYASKWLPDISSAENGLTQQQFESSTASPESVTASWMKKRFFVETLVGVLPPEKDSIPCNFLLRLLRVANMVGVEASYRQELEKRISWQLDQAAINELMIPSFSHTCGTLLDVELVIRLVKRFVSLDHEGAKTGAALVKVAKLVDCYLAEAAMDANLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPSVSKQERKGLCKLIDSRKLTPEASLHAAQNERFPVRAVIQVLFSEQTKLNRHMDWSSSFSSLRSPNGRFDQPTRCLSKREMNVQQMEIKKLKEEVYRLQSQCNAMQMQMERMSEKKSGRSFFKWKKLGMAAFSKGTGEVEDDQEEGEREVGFGRQTPMDMKSGLVKCRTPHKLRKSMS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5159 427 Coils Coil 330 357 - -
Lja3g5159 427 MobiDBLite consensus disorder prediction 386 403 - -
Lja3g5159 427 MobiDBLite consensus disorder prediction 384 412 - -
Lja3g5159 427 Pfam NPH3 family 22 273 IPR027356 -
Lja3g5159 427 PANTHER OS12G0117600 PROTEIN 10 426 IPR043454 -
Lja3g5159 427 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 10 426 - -
Lja3g5159 427 ProSiteProfiles NPH3 domain profile. 21 297 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5159 Lja-Chr3 93953507 93956491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5159 20 360 EF-hand Containing Proteins AT3G44820 31.830 9.03e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5159 - - gmx:100777820 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5159 3 93953507 93956491 Lja3g5159 3 93953507 93956491 ECH
Lja3g5159 3 93953507 93956491 Lja3g2112 3 24670671 24673416 PCT