Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2112 ATGGCCGAAAAGGGTCTCACACAGTTCGAGGAATCGACTGAGAGTGTCACCACTTCATGGATGAAGAAGAGGTTCTTCATGGAAACCTTGGTTGGTGTTCTGCCTCCTGAGAAGGACGCCGTCCCCTGCAACTTCCTCCTCCGCCTCCTCAGAACCGCCAACATGGTTGGCGTTGAGGGCAGTTACAGGCAGGAGCTGGAGAAGCGCATTTCGTGGCAGTTAGACCAGGCTTCGTTGAAGGAGCTTGTGATACCTTCTTTCAGTCACACTTGTGGGACTCTGTTGGATGTTGAATTGGTGATTAGGCTGGTGAAGAGGTTCGTGAGCTTGGATAGTGAAGGGGCTAAGAGCGGTGCTGCTTTGCTTAAAGTGGCGAAGTTGGTTGATTCGTATCTTGCTGAAGCTGCTATGGATGCCAATTTGAGCTTGTCTGAGTTTGTTACTCTTGCGGGTGCTCTTCCAAGTCATGCAAGAGCAATAGATGATGGATTGTACAGAGCCATTGACACTTATCTAAAAGCACATCCAAGTGTGTCAAAGCAAGAAAGGAAGGGTCTGTGCAGGCTTATTGATTGCCGGAAACTGACACAAGAGGCTTCACTTCACGCAGCTCAAAACGAACGCTTCCCTGTGAGGGCGGTGATTCAGGTTCTCCTCTCCGAGCAAACCAAACTGAACCGCCACACGGAGTGGAGCGGCTCCATCATGAGTGGCGGCCCGAGCCCAAATGGTGGCGGCTGGTTTGACACGGCGCGGTGCCTGTCGAAGCGCGAGATAAACGCTAAGCATGTGGAGATAAGGAAGCTGAAGGAGGACGTGCAGAGGCTGCAAGGGCAGTGCAGCGCCATGCAGGTGCAGATGGAGAAGATGGTGGAGAAGAAGAAAGGTTTCTTCAAGTGGAAGAAGTTCCCATTCAGCAAAGGGGAGAGTGCAGTGTTGGAGAAAACGGAACAAGATGGAGTTGAGTTTGAAAGGCAAACACCTGGTGCTGCCACTAATGTGGACATGAAAACCAGGTTAGTGACTGTCAAAGGGAAGACTCCTCAGAAGTGGAGGAAATCCATGTCCTGA 1071 0.5126 MAEKGLTQFEESTESVTTSWMKKRFFMETLVGVLPPEKDAVPCNFLLRLLRTANMVGVEGSYRQELEKRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVKRFVSLDSEGAKSGAALLKVAKLVDSYLAEAAMDANLSLSEFVTLAGALPSHARAIDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKLNRHTEWSGSIMSGGPSPNGGGWFDTARCLSKREINAKHVEIRKLKEDVQRLQGQCSAMQVQMEKMVEKKKGFFKWKKFPFSKGESAVLEKTEQDGVEFERQTPGAATNVDMKTRLVTVKGKTPQKWRKSMS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2112 356 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 356 - -
Lja3g2112 356 Pfam NPH3 family 13 200 IPR027356 -
Lja3g2112 356 ProSiteProfiles NPH3 domain profile. 1 224 IPR027356 -
Lja3g2112 356 PANTHER OS12G0117600 PROTEIN 1 356 IPR043454 -
Lja3g2112 356 Coils Coil 259 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2112 Lja-Chr3 24670671 24673416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2112 26 225 EF-hand Containing Proteins AT3G44820 42.130 2.99e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2112 - - gmx:100777676 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2112 3 24670671 24673416 Lja3g2112 3 24670671 24673416 ECH
Lja3g5159 3 93953507 93956491 Lja3g2112 3 24670671 24673416 PCT