Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5150 ATGGGTGCTTCTCTTCCTCCAAAGGAAGCCAACCTCTTCAAGCTTATTGTTAAATCCTATGAATCCAAACAATATAAGAAGGGCCTCAAAGCAGCCGATACGATTTTGAGGAAATTTCCAGACCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGTATGGATCGTAAACCTGAGGCATATGAACTGGTTCGGCAAGGATTAAAGAATGATCTGAAAAGTCATGTTTGCTGGCATGTTTTTGGTCTCCTTTATCGGTCAGACAGAGATTATAGGGAAGCGATCAAGTGCTACCGTAATGCACTGAAAATTGATCCAGACAATATTGAAATCTTACGAGACCTGTCGCTCTTACAGGCTCAAATGCGAGATTTAACTGGCTTTGTTGAGACACGGCAACAGCTTCTGACTCTCAAGCCAAACCATCGCATGAATTGGATTGGCTTTGCTGTTTCACATCATCTGAACTCTAATGCATCAAAGGCTATTGAAATTCTTGAAGCGTATGAAGGGACAGTAGAAGATGATTATCCTCCACAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATATAAGATCTCTTTGTTAGAGGAATGTGGTTTCTTTGAGAGAGCTCTTGAGGAGTTGCAGAAGAATGAGTCAAAAATTGTTGATAAGCTTGGATATAAAGAACAAGAGGTTTCACTTTTTGTGAACCTTGGTCGCTTAGAAGAAGGCGAGAAATTGTACCAGGCATTACTTGCCATGAATCCTGACAATTATAGTTATTATGAAGGCCTCCAAAAGTGTGTTGGGTTATATTCAGAAGATGGCCATTTTGCTCCTGATGAGATAGATCGGTTAGATGCCTTGTACAAAACACTTGGGCAGCAATTTAAGTGGTCTTCTGCTGTTAAGAGAATACCACTGGATTTTCTACAAGGTGATAGATTTCGAGAAGCAGCTGATAGTTATATGAGACCTCTCCTTACTAAGGGAGTTCCATCTCTATTCTCTGATCTTTCTTCTTTGTACGATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAGAATTCAATTAGGACTACTGGTACATACCCTGGGAGGGTGGAAAAAGAGCCCCCTTCAACTCTTATGTGGATTTTGTTCTTGTTGTCTCAGCATTATGACAGGCGGAGTCAATATGAAATTGCTCTTTCTAAAATCAATGAGGCTATTGAACACACACCTACCGTCATTGATCTATATTCTGTCAAGAGTAGGATACTGAAGCATGCTGGTGACTTGGCTGCTGCTGCTGCATTTGCAGATGAAGCTAGATGCATGGATCTTTCAGATCGCTATGTTAATAGTGAATGCGTTAAACGCATGCTGCAAGCTGATCAGGTGGTTTTGGCAGAAAAAACTGCTGTGTTATTCACAAAAGAAGGGGATCAGCACAACAACCTGCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCTGCTGAAAGCTATTTCCGCCAAGGTGATCTTGGACTGGCTCTCAAGAAATTTTTAGCAGTGGAGAAACATTATACAGATATTACTGAAGATCAATTTGATTTTCATTCATATTGCTTAAGGAAAATGACATTGCGTACGTATGTGGAGATGCTTAAATTTCAAGACCGGTTGCATTCACATGTATATTTTCATAAAGCCGCTGTTGGTGCTATCAGATGTTACATAAAATTGCACGATTCTCCTCCAAAGTCTACAGCTGAGGAAGATGATGATATGTCTAAGTTGCTTCCATCTCAGAAAAAGAAATTGAGGCAAAAACAGAGAAAGGCGGAAGCAAGAGCTAAGAAAGAGGCAGAAGAAAAGAATGAAGAATCAAGTGCCAGTGGGATATCAAAGTCTGGGAAACGACAGGCAAAACCTGTTGATCCAGATCCACGTGGGGAAAAATTGTTGCAGGTTGAAGACCCACTGTTGGAAGCTACAAAGTACTTGAAGTTGCTGCAGAAGAATTCACCTGATTCATTGGAGACACACTTGCTCTCTTTTGAATTACATATGAGAAGACAGAAAATTTTGCTAGCCTTCCAGGCTGTAAAGCAGTTACTGAGGTTGGATGCCGAACACCCTGATTCTCATCGCTGCTTGATTAAATTCTTCCATAAAGTGGGATCCCTAAACACTCCTGTGAATGACAGCGAGAAGCTCGTCTGGAGCGTCGTGGAAGCTGAACGCCAAACTATTAGTCAGTTGCAGGGGAAATCTCTGTTTGAGACAAATAAGTCATTCCTTGAAAAATATGAAGATTCTTTGATGCATAGAGCTGCTTTTGGAGAAATGATGTACGTTTTAGATCCCAGCAGAAGGTCTGAGGCTGTCAAGATTATTGAAGGGTCAACCAATAGCCCTGTGTCAAGAAATGGCACAAATTGGAAACTAGAAGATTGTATTGAAGTTCATAAACTTCTTGGAACCGTCCTTGTTGATAAGGATGCGGCATTGAGATGGAAAGTACGGTGTGCTGAAATTTTCCCGTACTCTGTATACTTTGAGGGTCGTCACAGTTCTGCCTCTCCCAACTCCGCTCTCAATCAGATATGCAAGAAAAGCTTTGAAAATGGAAGTTCTAGCCATTCGGTAGGTAATTGCAAAGTGGAATCTATTACATCAAATGGGAAGCTAGATACATTTAAAGATCTCACTATTTGA 2694 0.4091 MGASLPPKEANLFKLIVKSYESKQYKKGLKAADTILRKFPDHGETLSMKGLTLNCMDRKPEAYELVRQGLKNDLKSHVCWHVFGLLYRSDRDYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNASKAIEILEAYEGTVEDDYPPQNERCEHGEMLLYKISLLEECGFFERALEELQKNESKIVDKLGYKEQEVSLFVNLGRLEEGEKLYQALLAMNPDNYSYYEGLQKCVGLYSEDGHFAPDEIDRLDALYKTLGQQFKWSSAVKRIPLDFLQGDRFREAADSYMRPLLTKGVPSLFSDLSSLYDHPGKADILEQLILELENSIRTTGTYPGRVEKEPPSTLMWILFLLSQHYDRRSQYEIALSKINEAIEHTPTVIDLYSVKSRILKHAGDLAAAAAFADEARCMDLSDRYVNSECVKRMLQADQVVLAEKTAVLFTKEGDQHNNLHDMQCMWYELASAESYFRQGDLGLALKKFLAVEKHYTDITEDQFDFHSYCLRKMTLRTYVEMLKFQDRLHSHVYFHKAAVGAIRCYIKLHDSPPKSTAEEDDDMSKLLPSQKKKLRQKQRKAEARAKKEAEEKNEESSASGISKSGKRQAKPVDPDPRGEKLLQVEDPLLEATKYLKLLQKNSPDSLETHLLSFELHMRRQKILLAFQAVKQLLRLDAEHPDSHRCLIKFFHKVGSLNTPVNDSEKLVWSVVEAERQTISQLQGKSLFETNKSFLEKYEDSLMHRAAFGEMMYVLDPSRRSEAVKIIEGSTNSPVSRNGTNWKLEDCIEVHKLLGTVLVDKDAALRWKVRCAEIFPYSVYFEGRHSSASPNSALNQICKKSFENGSSSHSVGNCKVESITSNGKLDTFKDLTI* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5150 897 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 879 - -
Lja3g5150 897 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lja3g5150 897 Gene3D - 505 725 - -
Lja3g5150 897 MobiDBLite consensus disorder prediction 577 594 - -
Lja3g5150 897 SUPERFAMILY TPR-like 21 263 IPR011990 GO:0005515
Lja3g5150 897 SMART tpr_5 380 413 IPR019734 GO:0005515
Lja3g5150 897 SMART tpr_5 43 76 IPR019734 GO:0005515
Lja3g5150 897 SMART tpr_5 77 110 IPR019734 GO:0005515
Lja3g5150 897 Pfam TPR repeat 84 123 - -
Lja3g5150 897 Coils Coil 195 215 - -
Lja3g5150 897 SUPERFAMILY TPR-like 233 450 IPR011990 GO:0005515
Lja3g5150 897 MobiDBLite consensus disorder prediction 577 645 - -
Lja3g5150 897 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Lja3g5150 897 Coils Coil 596 620 - -
Lja3g5150 897 Gene3D - 2 503 - -
Lja3g5150 897 PANTHER BNAC02G23120D PROTEIN 10 879 - -
Lja3g5150 897 MobiDBLite consensus disorder prediction 606 622 - -
Lja3g5150 897 PIRSF NAT_A 1 818 IPR021183 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5150 Lja-Chr3 93822908 93840325 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5150 K20792 - gmx:100776968 1520.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5150 3 93822908 93840325 Lja3g5150 3 93822908 93840325 ECH
Lja3g5150 3 93822908 93840325 Lja3g2096 3 24435976 24450092 PCT