Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2096 ATGGGTGCTTCTCTGCCTCCGAAGGAGGCCAACCTCTTCAAGCTTATTGTTAAATCATATGAAACCAAGCAATATAAGAAGGGCCTCAAAGCAGCTGATGCGATTTTGAGAAAATTTCCAGACCATGGAGAAACTTTATCGATGAAGGGCTTGACATTAAATTGCATGGATCGTAAATCTGAAGCATATGACCTTGTTCGTCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTTTGGACTCCTTTATCGATCAGACAGAGAATACAGGGAGGCAATCAAGTGCTACCGAAATGCACTGAAAATAGATCCTGACAATATTGAAATTCTGCGTGACCTATCACTCTTACAGGCTCAAATGCGAGATTTAACGGGCTTTGTTGAGACCAGACAGCAACTTTTGACTCTGAAGCCAAATCATCGCATGAACTGGATTGGGTTTTCTGCTGCCCATCATTTGAACTCTAATGCGTCCAAGGCTGTTGAAATTTTAGAAGCATATGAAGGGACTTTAGAAGGTGATTATCCTCCAGAAAATGAACGATGGGAGCATGGGGAAATGCTTTTGTATAAGATTTCTTTATTAGAGGAATGCGGATTTCTTGAGAGAGCTCTGGAGGAGTTGCGCAAAAAAGAATCAAAAATTGTTGATAAGCTTGCAGTTAAAGAACAAGAGGTTTCACTTTTACGGAAGCTGGGTCACTTAGAAGAAGCTGAAACATTGTACCGGGGATTACTTTCCACGAATCCTGATAATTATAGATACTATGAAGGTCTCCAAAAGTGTGTTGGGTTATATTTAGAAGATGGCCAGTTCTCTCTTGATCAAATAGATCGGTTAGATTCCTTGTACAAAACACTTGGGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCCGACAATTATATTAGGCCTCTCTTAACTAAGGGAGTTCCATCTCTGTTCTCTGATCTTTCTTCTTTGTATAATCATCCTGGGAAGGCAGACATTTTGGAACAACTTATCCTCGATTTAGAGCATTCAATTAGGACGTCAGGCCAATATCCTGGGAGTATGGAAAAGGAACCCCCTTCAACTCTGATGTGGACTTTGTTTTTATTGGCTCAGCATTATGACAGGCGAGGGCAATATGAACTTGCTATTGCTAAAATCGATGAGGCTATAGAACACACTCCTACTGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTTAGTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAATGTGTTAAGCGCATGCTGCAGGCTGATCAGGTTGCCTTGGCAGAAAAAACTGCTGTGTTGTTCACAAAAGAAGGGGATCAACACAACAACCTTCATGATATGCAGTGCATGTGGTATGAGCTTGCCTCGGGTGAAAGCTTTTTCCGCCAGGGTGATCTTGGACGGGCTCTCAAGAAATTTTTAGGAGTGGAGAAGCACTATGCTGATATTAATGAGGACCAATTTGATTTTCATTCATATTGCTTAAGGAAAATGACTCTGCGTACTTACTTGGAAATGCTTAAATTTCAAGATCAATTGCACTCACATTCATATTTTCATAAAGCAGCTGCTGGAGCTATCAGATGCTATATTAAGTTGCATGACTCTCCCCCGAAGTCTACGGCGGAGGAAGATGAGGAGATGTCAAAGTTGCTTCCTGCTCAGAAAAAGAAAATGCGACAAAAACAAAGAAAGGCAGAAGCAAGAGCTAAGAAAGGAGCAGAAGAAAAGAATGAAGAGTTAAGTGCCAGTGGGGTATCCAAGTCTGGGAAACGGCATGTAAAACCTGTGGATCCTGATCCACATGGGGAGAAGTTATTGCAGGTTGATGATCCACTGTCGGAAGCTATTAAATACTTGAAGTTGCTGCAGAAGAATTCACCTGATTCATTAGAGACACACTTGCTCTCTTTTGAATTATATACAAGGAAGCAGAAGGTTTTGCTTACCTTTCAGGCTGTAAAGCAGTTACTGAGGTTGGATGCTGAACACCCTGATTCTCATCGTTGCCTGATAAAGTTTTTTCATCAAGTGAGATCCATGAATACTCCTGTGACTGAAAGCGAGAAACTGATATGGAGTGTCTTAGAAGCTGAGCGCTCAACTATTAGTCAGCTGCATGAGAAAACTCTGTTTGAGGCAAACAACTCTTTCCTTGAAAAACATAAAGATTCTTTGATGCATAGAGCTGCTTTTGCCGAAACCTTGTACATTTTGGATCCAAATAGAAAGTCTGAGGCTGTCAAGTTGATTGAAGAGTCAACAAATAATATTGTGCCAAGAAATGGAGCACTCGGACCGATCAGGGAATGGAAACTTAAAGACTGTATTGCAGTTCACAAACTTTTGGGAACAGTACTTCTTGATCAAGATGCTGCATTGAGATGGAAAGTGCGTTGTGCAGAATACTTTCCTTATTCAAGGTACTTTGAAGGTAGCCGCAGCTCTGCCTCTTCAAACACGGCCTTAAAACAGTTATCTAAGAACTCTGAAAATGAGACTTTGAACCATTCCGTGTGTACTCAAAACGTGGGATCCATAACATCAAATGGGAAACTAGAGGCATTTAAACAACTTGCTATCTGA 2706 0.4091 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILRKFPDHGETLSMKGLTLNCMDRKSEAYDLVRQGLKNDLKSHVCWHVFGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFSAAHHLNSNASKAVEILEAYEGTLEGDYPPENERWEHGEMLLYKISLLEECGFLERALEELRKKESKIVDKLAVKEQEVSLLRKLGHLEEAETLYRGLLSTNPDNYRYYEGLQKCVGLYLEDGQFSLDQIDRLDSLYKTLGQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILDLEHSIRTSGQYPGSMEKEPPSTLMWTLFLLAQHYDRRGQYELAIAKIDEAIEHTPTVIDLYSVKSRILKHAGDFSAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKEGDQHNNLHDMQCMWYELASGESFFRQGDLGRALKKFLGVEKHYADINEDQFDFHSYCLRKMTLRTYLEMLKFQDQLHSHSYFHKAAAGAIRCYIKLHDSPPKSTAEEDEEMSKLLPAQKKKMRQKQRKAEARAKKGAEEKNEELSASGVSKSGKRHVKPVDPDPHGEKLLQVDDPLSEAIKYLKLLQKNSPDSLETHLLSFELYTRKQKVLLTFQAVKQLLRLDAEHPDSHRCLIKFFHQVRSMNTPVTESEKLIWSVLEAERSTISQLHEKTLFEANNSFLEKHKDSLMHRAAFAETLYILDPNRKSEAVKLIEESTNNIVPRNGALGPIREWKLKDCIAVHKLLGTVLLDQDAALRWKVRCAEYFPYSRYFEGSRSSASSNTALKQLSKNSENETLNHSVCTQNVGSITSNGKLEAFKQLAI* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2096 901 SUPERFAMILY TPR-like 232 444 IPR011990 GO:0005515
Lja3g2096 901 Coils Coil 596 616 - -
Lja3g2096 901 MobiDBLite consensus disorder prediction 577 646 - -
Lja3g2096 901 MobiDBLite consensus disorder prediction 608 622 - -
Lja3g2096 901 MobiDBLite consensus disorder prediction 577 594 - -
Lja3g2096 901 Pfam TPR repeat 84 123 - -
Lja3g2096 901 SMART tpr_5 380 413 IPR019734 GO:0005515
Lja3g2096 901 SMART tpr_5 43 76 IPR019734 GO:0005515
Lja3g2096 901 SMART tpr_5 77 110 IPR019734 GO:0005515
Lja3g2096 901 PIRSF NAT_A 1 818 IPR021183 -
Lja3g2096 901 Gene3D - 2 503 - -
Lja3g2096 901 MobiDBLite consensus disorder prediction 631 646 - -
Lja3g2096 901 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Lja3g2096 901 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lja3g2096 901 PANTHER BNAC02G23120D PROTEIN 10 873 - -
Lja3g2096 901 SUPERFAMILY TPR-like 17 260 IPR011990 GO:0005515
Lja3g2096 901 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 873 - -
Lja3g2096 901 Coils Coil 195 229 - -
Lja3g2096 901 Gene3D - 505 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2096 Lja-Chr3 24435976 24450092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2096 K20792 - gmx:100820094 1598.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2096 3 24435976 24450092 Lja3g2096 3 24435976 24450092 ECH
Lja3g5150 3 93822908 93840325 Lja3g2096 3 24435976 24450092 PCT