Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5145 ATGGAGTTGATTTCAGGTCTTCCAGAGGATGTAGCCCGGGACTGTCTAATCCGGGTTTCATACGAGCAGTTTCCAGCCGTCACCGCCGCGTGTAAAGGGTGGAACACGGAGATTCAGTCACCGGAGTTTCGCCGGCGGCGGAGGGTCACCGGAAACACACAGAAAATCCTTGTCACGGCTCAAGCCCGGTTCGATTCAGACACATGCGGTGGTTTGCTAGTAAAAGCTACAACGAACCCGGTTTACCGGCTCAGCGTGTTTGAACCGGAAACCGGTAACTGGAGCGAGTTAACCATGCCACCCGAATTCGACTCGGGCTCGGGTCTACCCATGTTCTGCCAGATCGCGGGTGTCGGGTATGAACTCGTGGTTATGGGCGGGTGGGACCCGGAGTCATGGAAAGCCTCGAATTCCGTGTTCATCTACAATTTTCTATCCGCCACGTGGCGACGTGGGGCCGACATGCCTGGTGGGCCCCGCACATTCTTCGCGTGCACGTCGGATCAAGATCGAACGGTCTACGTTGCTGGCGGACACGACGAGGAGAAGAACGCGCTCAAATCCGCGTTAGCATATGACGTGGCAAACGACGAGTGGGTCCCGCTTCCTGACATGGCGAGGGAGCGCGACGAGTGCAAGGCGGTGTTCCGCGGCGGCGCCGGGAAGCTCCGGGTTGTTGGCGGCTACTGCACGGAGATGCAGGGGCGGTTTGAGCGGAGTGCGGAGGAGTTTGATGTTGACACGTGGCAGTGGGGTCCGGTGGAGGAGGAGTTTCTGGATTGCGGCACGTGTCCGAGGACTTGCTTGGACGGTGGTGATGCAATGTATATGTGTAGAGGTGGTGACGTGGTGGCGTTGCAGGGGAACACGTGGCAGACGGTGGCGAAGGTGCCGAGTGAGATTCGAAATGTTGCGTGCATGGGAGCGTGGGAAAGGTCATTGTTGTTGATTGGGTCCAGTGGGTTTGGGGAGCCTCATATGGGCTTTTTGTTGGATCTGAAGAGTGGTAAATGGGCTAAACTTGTGAGCCCACAAGACTACACGGGCCATGTTCAATCTTACTGCCTTTTGGAGATATAA 1080 0.5694 MELISGLPEDVARDCLIRVSYEQFPAVTAACKGWNTEIQSPEFRRRRRVTGNTQKILVTAQARFDSDTCGGLLVKATTNPVYRLSVFEPETGNWSELTMPPEFDSGSGLPMFCQIAGVGYELVVMGGWDPESWKASNSVFIYNFLSATWRRGADMPGGPRTFFACTSDQDRTVYVAGGHDEEKNALKSALAYDVANDEWVPLPDMARERDECKAVFRGGAGKLRVVGGYCTEMQGRFERSAEEFDVDTWQWGPVEEEFLDCGTCPRTCLDGGDAMYMCRGGDVVALQGNTWQTVAKVPSEIRNVACMGAWERSLLLIGSSGFGEPHMGFLLDLKSGKWAKLVSPQDYTGHVQSYCLLEI* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5145 359 Pfam Kelch motif 116 156 IPR006652 GO:0005515
Lja3g5145 359 Pfam Kelch motif 170 205 IPR006652 GO:0005515
Lja3g5145 359 SUPERFAMILY F-box domain 3 49 IPR036047 GO:0005515
Lja3g5145 359 SUPERFAMILY Kelch motif 77 341 IPR015915 GO:0005515
Lja3g5145 359 Gene3D - 68 351 IPR015915 GO:0005515
Lja3g5145 359 SMART kelc_smart 121 169 IPR006652 GO:0005515
Lja3g5145 359 SMART kelc_smart 172 219 IPR006652 GO:0005515
Lja3g5145 359 PANTHER OS02G0208700 PROTEIN 1 359 IPR044595 GO:0080037|GO:2000762
Lja3g5145 359 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5145 Lja-Chr3 93785443 93787255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5145 7 199 Miscellaneous Gene Families AT4G33900 25.854 1.18e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5145 - - gmx:100786398 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5145 3 93785443 93787255 Lja3g5145 3 93785443 93787255 ECH
Lja3g5145 3 93785443 93787255 Lja3g2095 3 24406840 24408841 PCT