Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2095 ATGGAGCTAATTTCTGGTCTACCGGATGATGTTGCGCGAGACTGTCTGATTCGGGTTTCATACGAGCAGTTCGCCGCAGCGGCGGCGGTCTGCAGAGGGTGGAAAACAGAGATACACTCGCCGGAGTTCCACCGTCAACGGCGGAGCACGGGGCACGCCGAGAAAGTCATGGTGACGGTTCAAGCCCAGCCCGAACCGGAGAAGTCCGGAACCGGTTCGACAAAGCGTCTGACGAACCCGGTTTACCGGCTCAGCTTATTCAACCTGGGAACAGGTGACTGGAGCGAGTTACCGGCACCTCCCGGTTTCGGTTCGGGATTACCGGTGATGTGTCAGGTTGCCGGTGTCGGGTACGATCTTGTGGTGATGGGCGGGTTAGACCCGGATTCATGGAAAGCATCGAATTCGGTGTTTATTTATAATTTCTTGTCGGGGAGGTGGCGCAGTGGGACCGACATGCCCGGTGGGTCCCGCTCGTTTTTCGCATGCGCGTCGGATTCTCACCGGACGGTGTTCGTCGCCGGCGGGCACGACGATGAGAAGAACGCGCTGAGGTCGGCGCTGGCGTACGACGTGGAAACGGACGAGTGGGTCCAGCTGCCGGACATGGCGGCGGAGCGCGACGAGTGCAAGGCGGTGTACCGCCGTGACGGGAGCTTCGTCGTCGTCGGTGGTTACCGGACGGAGGCTCAGGGAGGTTTTGAGAGGACCGCAGAGGCGTTTGATGCGGCGGAGGGGAAGTGGGGCCAGGTGGAAGAGAACTTCTTGGGTTGCGCCACGTGTCCGAGGACGGTTGTGGACGGCGGCGATGGAGATGAGAGCGGGTACATGTGCAGTGGCGGCGGGGATTTGATGGCGAAGAGGGGGGACACGTGGCAGAAGGTGGCGAGGGTGCCGGGTGAGATATGCAACGTGGCGTATGTTGGAGCGTTGGATGGGTCAGTGTTGTTGATAGGATCGAATGGGTATGGTGGAGTTCATATGGGTTATGTGTTTGATGTGAAGAGTTGTAGTTGGAGAAAATTGGAGAGTCCAGAAGGGTTCCATGGACATGTCCAAAGTGGTTGCATCTTGGAGATTTGA 1083 0.5873 MELISGLPDDVARDCLIRVSYEQFAAAAAVCRGWKTEIHSPEFHRQRRSTGHAEKVMVTVQAQPEPEKSGTGSTKRLTNPVYRLSLFNLGTGDWSELPAPPGFGSGLPVMCQVAGVGYDLVVMGGLDPDSWKASNSVFIYNFLSGRWRSGTDMPGGSRSFFACASDSHRTVFVAGGHDDEKNALRSALAYDVETDEWVQLPDMAAERDECKAVYRRDGSFVVVGGYRTEAQGGFERTAEAFDAAEGKWGQVEENFLGCATCPRTVVDGGDGDESGYMCSGGGDLMAKRGDTWQKVARVPGEICNVAYVGALDGSVLLIGSNGYGGVHMGYVFDVKSCSWRKLESPEGFHGHVQSGCILEI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2095 360 SUPERFAMILY Kelch motif 79 344 IPR015915 GO:0005515
Lja3g2095 360 Pfam F-box domain 4 45 IPR001810 GO:0005515
Lja3g2095 360 SUPERFAMILY F-box domain 3 48 IPR036047 GO:0005515
Lja3g2095 360 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 360 - -
Lja3g2095 360 SMART kelc_smart 170 217 IPR006652 GO:0005515
Lja3g2095 360 SMART kelc_smart 119 167 IPR006652 GO:0005515
Lja3g2095 360 Pfam Kelch motif 110 156 - -
Lja3g2095 360 Gene3D - 68 352 IPR015915 GO:0005515
Lja3g2095 360 PANTHER OS02G0208700 PROTEIN 1 360 IPR044595 GO:0080037|GO:2000762
Lja3g2095 360 Pfam Kelch motif 170 203 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2095 Lja-Chr3 24406840 24408841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2095 7 248 Miscellaneous Gene Families AT4G33900 22.814 1.34e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2095 - - ccaj:109808365 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2095 3 24406840 24408841 Lja3g2095 3 24406840 24408841 ECH
Lja3g5145 3 93785443 93787255 Lja3g2095 3 24406840 24408841 PCT