Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5142 ATGGCTACAAGCAGTGCGGGTGAGGAAGATGTTGAGTATGAGAGTGATCCTGAGGAGCTCAAGAGATCGCTGTCAATGCGGCGGAGGCGTGAGGCGAGTGATGATGAGGAAGGGGAGGATGGAGGTGGAGAAGAGGAAGGCAAGGGTGCGGATCGGCGGTCAATTCGTTCTGATGAATCGGAGGATGAGGGTGGAGTGGCTGATTATGATGACGAAGAAGAGGGGTTATTGGAAGAAGAAGTAGAAGTAGAAGAGGAAGAAGTAGTGGAAGTGAAAGTGGGAGAAGATGAGGAAGAGGTTTATGAGGAAAGGGGTGTGGAGGAAGGAGTTGTGAATGGCTCAGTAGTTGTGGTGAAGGATTCTGATGCTGATTTCAAGCCCAATTTGGAAGAATCAGGGGACATGGAGGAGGGTGATGGTGAAGAGGAGAAGAAAGAGACTGAACCGTTTTCAGTGCCCACTGCTGGAGCATTTTACATGCACGATGACCGCTTCAGGGACAATGCTGGTGGCCGTGGCCAAAGGCGGATGCGTGGTGGAAGGAGGCTGTGGGAGTCCAAAGATGAGAGGAAATGGGGACATGATAAGTTTGAGGAAATAACTTTTCAGGATAGGCCCTACAAAGAGGGAAGGAGACCTTCTAGGGGTAATTTTCGGGGCCGTGGTAAAACTCGAGGCGTTGCTCGTGGAGGGTATGTTCGTGGTGATAGAAAAAGTTATGATGACAGAGACAATCAAAATCAGGTACCAAAAGGTGTTGTGCGAGGGAGAGGTCCCCGAAGGTACGAGCCTACCTATAAAAACAATGATGCAGCACCCCAGATGCAAAATAGACAGTCCGGGAAGCCTGTTTACAAAGCTTCAAATGTTAGTTCGGGGAGAGCTTTCACACCCATTTCTAATTCAGAATCTGATCCTGTCCCTGCTAAGAAACCAGTTCTTGCATCAAACTTGAATTATGCATCTCCCCCCTTTTACCCTTCAGGCTCTGCTAACAAAGACACAAGCCTGACACCAAAACGGGATGTCCAAACTGGCAGTACAAGCAGGAATGTTCACACTGGTGTTATGGGTGAGGGTTTTGTTGCTCAACAAAACAATGCCTTGCACAGGGGAAAGAATATCGTTGATTCTATCAGCATGGACAAGCTGCATATTGATGGTTCCTTCCGCCCATCTGTCGGGAAGCCTTTGAACAATTTGCACATGCACCCACCTGGATCTTCTGAAGTCCGTGCTTCTCAATCTACTCATCCAAGGGCTTCTGGGAGGGGTGGACCAATCCCAGTTCAGATGAATTATCATCCTGCTGCCTCACATAATCAAGTAAATAAAATAACTCCAAGTCCAACACAATACCATGCCATTCAGAAAACTTCTGCTCCAGGGCGAACTTCAATGCAAGCCCCTGCTCCACAGTTGGGTCATCGGCCTGGGAGCTCATCTCCCCCTAAAGCATCTGTGGCAAATGGTTCAGATGCTGGAGAAATTGATGTAGCTTCAGAATCAGGTAAATCCATGGGCACATTGGTTGGAAATGAAAGAGCAGTTTCCCAAGGTAATGGAAGAGGTTCTTTCATTTATGGTGGAGCTATGGGCACTCCTGGAAATATGGGTGGTGGTCGTGGGGATCAGAACTTCCCAACCTTCTTGCCAGTTATGCAATTTGGAGGGCAGCATCCTGGTGGTATGGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATATGTTGCTAATCCTCAACTTGGTATGGGAAGCTCTGAAATGACATGGCTACCAGTTTTGGCTGGTGCTGCAGGAGCTCTAGGAGCTACTTATGGCTCACCCTATCTCACTGTTGCTGGTGCTTATCCTGGTCGGCAATCAGGACAGACATCTTCAGCGGCTACTACAAGCAAGGAAAATAATGTGAGTAAAGCTAATAATGAATGGGAGCCACCTCAGAGACCTGAGCCTGTAAATGATGAGTTTGGTCAGCGGCAAAATAAGCCCCGCAGATACTCAGAGATGAACTTTGGGCAATGA 2025 0.4835 MATSSAGEEDVEYESDPEELKRSLSMRRRREASDDEEGEDGGGEEEGKGADRRSIRSDESEDEGGVADYDDEEEGLLEEEVEVEEEEVVEVKVGEDEEEVYEERGVEEGVVNGSVVVVKDSDADFKPNLEESGDMEEGDGEEEKKETEPFSVPTAGAFYMHDDRFRDNAGGRGQRRMRGGRRLWESKDERKWGHDKFEEITFQDRPYKEGRRPSRGNFRGRGKTRGVARGGYVRGDRKSYDDRDNQNQVPKGVVRGRGPRRYEPTYKNNDAAPQMQNRQSGKPVYKASNVSSGRAFTPISNSESDPVPAKKPVLASNLNYASPPFYPSGSANKDTSLTPKRDVQTGSTSRNVHTGVMGEGFVAQQNNALHRGKNIVDSISMDKLHIDGSFRPSVGKPLNNLHMHPPGSSEVRASQSTHPRASGRGGPIPVQMNYHPAASHNQVNKITPSPTQYHAIQKTSAPGRTSMQAPAPQLGHRPGSSSPPKASVANGSDAGEIDVASESGKSMGTLVGNERAVSQGNGRGSFIYGGAMGTPGNMGGGRGDQNFPTFLPVMQFGGQHPGGMGVPAVGMAFPGYVANPQLGMGSSEMTWLPVLAGAAGALGATYGSPYLTVAGAYPGRQSGQTSSAATTSKENNVSKANNEWEPPQRPEPVNDEFGQRQNKPRRYSEMNFGQ* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5142 674 Pfam CASC3/Barentsz eIF4AIII binding 126 223 IPR018545 GO:0003729|GO:0006397|GO:0035145
Lja3g5142 674 PANTHER PROTEIN MLN51 HOMOLOG 1 674 IPR044796 GO:0003729|GO:0006397|GO:0035145
Lja3g5142 674 MobiDBLite consensus disorder prediction 325 353 - -
Lja3g5142 674 PANTHER PROTEIN MLN51 HOMOLOG 1 674 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 459 508 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 1 289 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 619 674 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 45 62 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 160 216 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 269 289 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 63 104 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 390 434 - -
Lja3g5142 674 Coils Coil 66 86 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 619 643 - -
Lja3g5142 674 SMART Btz_2 111 224 IPR018545 GO:0003729|GO:0006397|GO:0035145
Lja3g5142 674 MobiDBLite consensus disorder prediction 230 245 - -
Lja3g5142 674 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5142 Lja-Chr3 93756251 93761398 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5142 - - lja:Lj3g3v0139580.1 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5142 3 93756251 93761398 Lja3g5142 3 93756251 93761398 ECH
Lja3g5142 3 93756251 93761398 Lja3g2093 3 24392447 24396068 PCT