Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5140 ATGTTTTTGAAAACTTTTTTTTTTCAAAAACTTAAATGTAGTTGTCAGTTTTTGATTTTCAAATGTAAATTTGAAAACAAAACTTTGTTTTGTTTCTTGCATTTGCAGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAGAGAGTCAAATGTGTGGATCTGCATCCAACAGAGCCATGGATTCTGGCGAGTTTATACTCTGGAACTGTGTGTATCTGGAATTACCAATCTCAGACCATGGCCAAATCTTTTGAGGTTACTGAGTTACCAGTTAGATCAGCCAAGTTTGTTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTCATCCGTGTCTATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTGCTATCATCATCTGATGATATGCTCATTAAGCTTTGGGATTGGGAAAAGGGCTGGATTTGTACCCAGATATTTGAAGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGATACAAACACCTTTGCCAGTGCATCTCTTGATCGAACCATAAAGATCTGGAATCTTGGCTCTCCTGACCCTAATTTTACATTGGATGCCCATCAGAAAGGAGTGAATTGCGTTGATTACTTTACAGGTGGTGATAAGCCTTATCTAATCACTGGTTCTGATGATCACACTGCAAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTAGATGGTCACACACACAATGTGTCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCACTCGACAACTTACAGGCTTGAGAACACATTGAACTACGGCCTTGAAAGAGTTTGGGCTATTGGATACTTGAAGAGTTCACGTCGGGTTGTGATTGGCTATGACGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGGCTAAACATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGTAGATGCGGAGGTTGCTGATGGAGAAAGGTTGCCTTTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCCCAAAATTTAAAGCACAATCCTAATGGGAGATTCGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACCGCGTTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTAGAATTTGTCTGGTCTACGGATGGAGAATATGCAGTCAGGGAAAGTACATCCAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAACGAATATTTGGTGGTACTTTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGAATGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAAACCTCTATTGGGCTGATAGCGGTGATCTAGTTACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAACCGTGATGTTGTTTCATCGCATTTAGATAGTGGAAGACCCGTAGATGAGGAAGGTGTTGAAGATGCTTTTGAGCTCCTTCATGAAATGAATGAACGTGTCAGGACTGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTCCATTTGGACCGCCCTATGTACTTGTTGGGATACCTTGCAAACCAAAGTCGGGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAATACAAAACACTTGTGATGCGTGGCGATTTAGAAAGGGCCAGTGAAGTTCTACCATCAATCCCTAAAGATCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAAGATGCTCTTGAAGTAGCTACTGACCCGGACTATAGATTTGATCTAGCAATACAACTTGGAAGATTAGAGGTTGCAAAGAGCATTGCAATAGAAGTGCAGAGTGAGTCAAAATGGAAGCAGTTGGGAGAGCTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAATGTTTAAAGCATGCAAAGGATTTGAGTGGATTATTACTGCTGTATTCTTCTTTAGGCGATGCTGAAGGAATATCAAATCTTGCAACCCTTGCTAAAGAGCAAGGGAAGAACAATGTCGCATTCCTGTGCTTATTTATGTTGGGTAAACTTGAAGACTGTCTTCAACTATTGGTAGAAAGCAATCGGATTCCAGAGGCAGCTTTAATGGCTAGATCATATCTCCCAAGTAAGGTCTCTGAGATTGTGGCAATTTGGAGGAAAGATCTCAACAAGGTTAATCCTAAAGCTGCTGAATCTTTGGCTGATCCTGAGGAATATCCAAATTTGTTTGAAGACTGGCAAGTCGCCCTTGCTGTTGAATCTAAAGCTATAGAAACAAGGAATGTTTACCCTCCTGCAGAGCAGTACATCAGCCATGCTGACAAATCACATGTAACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAAGAGGAGCCTCTTGAGAATGGTGACTCGAATTATGAGCAAACTAAACAAGATGAAGAGGACTACACAGAGGAACAAGAGGAACAGAATGACTACAATGAGGAACAGGAGGAACAGAATGGAGAGGAAGGAAGCCAAGAGGAGGCCGTTGTAGTGGATGCGGAATCAACAGATGGTGCAGTACTCGTCAATGGTAACGAGGCTGACGAAGAGTGGGTGCTTGCACCACGTCACTAG 2880 0.4125 MFLKTFFFQKLKCSCQFLIFKCKFENKTLFCFLHLQPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSIGVDAEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSTDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYEWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVSSHLDSGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERASEVLPSIPKDHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKSIAIEVQSESKWKQLGELAMSTGKLEMAEECLKHAKDLSGLLLLYSSLGDAEGISNLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAIETRNVYPPAEQYISHADKSHVTLVEAFRNMQIEEEEPLENGDSNYEQTKQDEEDYTEEQEEQNDYNEEQEEQNGEEGSQEEAVVVDAESTDGAVLVNGNEADEEWVLAPRH* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5140 959 Pfam Coatomer WD associated region 354 798 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lja3g5140 959 MobiDBLite consensus disorder prediction 881 959 - -
Lja3g5140 959 PANTHER COATOMER 37 909 - -
Lja3g5140 959 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 215 IPR001680 GO:0005515
Lja3g5140 959 Gene3D - 625 833 - -
Lja3g5140 959 Gene3D - 46 335 IPR015943 GO:0005515
Lja3g5140 959 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 207 - -
Lja3g5140 959 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 162 IPR001680 GO:0005515
Lja3g5140 959 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 162 - -
Lja3g5140 959 PRINTS G protein beta WD-40 repeat signature 193 207 IPR020472 -
Lja3g5140 959 PRINTS G protein beta WD-40 repeat signature 279 293 IPR020472 -
Lja3g5140 959 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Lja3g5140 959 SUPERFAMILY WD40 repeat-like 37 332 IPR036322 GO:0005515
Lja3g5140 959 MobiDBLite consensus disorder prediction 899 925 - -
Lja3g5140 959 Pfam WD domain, G-beta repeat 53 78 IPR001680 GO:0005515
Lja3g5140 959 Pfam WD domain, G-beta repeat 126 162 IPR001680 GO:0005515
Lja3g5140 959 Pfam WD domain, G-beta repeat 169 206 IPR001680 GO:0005515
Lja3g5140 959 Pfam WD domain, G-beta repeat 255 291 IPR001680 GO:0005515
Lja3g5140 959 Pfam WD domain, G-beta repeat 212 250 IPR001680 GO:0005515
Lja3g5140 959 PANTHER COATOMER SUBUNIT BETA' 37 909 - -
Lja3g5140 959 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 253 - -
Lja3g5140 959 CDD WD40 52 332 - -
Lja3g5140 959 PIRSF Beta'-COP 37 929 IPR016453 -
Lja3g5140 959 SMART WD40_4 253 292 IPR001680 GO:0005515
Lja3g5140 959 SMART WD40_4 209 250 IPR001680 GO:0005515
Lja3g5140 959 SMART WD40_4 123 162 IPR001680 GO:0005515
Lja3g5140 959 SMART WD40_4 39 78 IPR001680 GO:0005515
Lja3g5140 959 SMART WD40_4 166 206 IPR001680 GO:0005515
Lja3g5140 959 SMART WD40_4 81 120 IPR001680 GO:0005515
Lja3g5140 959 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 291 - -
Lja3g5140 959 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 301 IPR001680 GO:0005515
Lja3g5140 959 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 259 IPR001680 GO:0005515
Lja3g5140 959 Coils Coil 896 923 - -
Lja3g5140 959 SUPERFAMILY WD40 repeat-like 262 529 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5140 Lja-Chr3 93737017 93748044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5140 86 327 Miscellaneous Gene Families AT5G08390 24.597 2.47e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5140 K17302 - gmx:100815780 1748.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5140 3 93737017 93748044 Lja3g5140 3 93737017 93748044 ECH
Lja3g5140 3 93737017 93748044 Lja3g2092 3 24379210 24389880 PCT