Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2092 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTGAAGTCTGTGGATCTACATCCAACAGAACCATGGATTCTAGCAAGTTTATACTCCGGAACTGTCTGTATTTGGAACTATCAAACTCAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAGCAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCCCATACAGATTACATCAGGTGTGTGGCAGTCCATCCTACTCTTCCTTATGTGCTGTCATCATCTGATGATATGCTCATTAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGGCATTCACATTATGTCATGCAAGTGACATTTAACCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCTAATTTTACGTTGGATGCCCATCAAAAGGGAGTGAATTGTGTTGACTACTTTACAGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCAAACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGCCACACACACAATGTATCTGCTGTGTGCTTTCACCCTGAACTTCCTATAATCATTACGGGCGCTGAAGATGGCACAGTGCGCATTTGGCATTCGACAACTTATAGGCTTGAAAACACATTGAACTATGGTCTTGAAAGAGTTTGGACCATTGGATACCTGAAGGGTTCACGTCGGGTTGTGATTGGCTATGACGAAGGAACTATTATGGTCAAACTTGGCCGAGAAGAACCTGTAGCCAGCATGGACAACAGTGGAAAAATAATTTGGGCTAAGCACAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCCGATGTGGAGATTGCTGATGGAGAAAGGCTGCCTTTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGAAGGTTTGTTGTTGTTTGTGGGGATGGTGAATATATTATATACACTGCTTTGGCGTGGAGAAATAGGTCATTTGGTTCAGCACTGGAAATTGTTTGGTCTTCCGATGGAGAGTATGCTGTAAGAGAAAGCACGTCCAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAAGAGTATCCGACCAACGTTTTCAGCCGAAAGAATATTTGGTGGCACTGTATTGGCTATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTGAACGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTTGTTGCGATTGCTAGTGATTCATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCATATTTAGATAGTGGAAACCCAGTAGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAGTGAACGTGTCAGGACGGGTATCTGGGTTGGTGATTGTTTTATCTACAGCAATTCTTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTCTACCTTATAGATAAAGAGTTCAACGTTATCGGATACACATTGCTTTTAAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCTTCTATTCCAAAAGAGCATCAGAACAGTGTGGCTCGTTTCCTGGAATCGAGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGGTTCGATCTAGCCATGCAGCTTGGGAAATTAGAAGTTGCAAAGGGTATTGCGACAGAAGTGCAGAGTGAGCCTAAATGGAAGCAGTTGGGAGAATTAGCCATGTCTTCTGGAAAGTTAGAAATGGCTGAGGAATGCTTAAAACATGCAATGGATTTGAGTGGGTTGTTGCTGCTATATTCTTCTTTAGGAGATGCCGAAGGGTTATCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAACTTGAAGACTGTCTTCAACTGTTGGTAGAAAGTAATCGGATTCCGGAGGCTGCTTTAATGGCTCGATCTTATCTCCCAAGCAAAGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAACAAGGTTAATCCAAAGGCTGCTGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTCGAAGATTGGCAAGTTGCTCTTGCTGTTGAATCTAAATCTGTAGAAACAAGGGGTGTTTACCCTCCTGCGGAGGAGTATGTCAACCATGCTGGTAAATCACATGTAACCCTAGTTGAAGCTTTCAGAAACATGCAGATTGAAGGGGAACAACCTCTTGAGAATGGGGAATCTAGTCATGAGTTGGCTGAACATAATGGAGAGGAGGACCATACCGAGGAACACGAGGAACAAAATGGAGAGGAAGGCAGCCAAGAGGAGGGAGTTGTAGTGGATGCTGATTCGACTGATGGTGCTGTCCTCATTAATGGTAATGAGGCTGACGAAGATTGGAGTGCCAATAATAAAGAGGACCCATCAACATAA 2760 0.4261 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDQTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGAEDGTVRIWHSTTYRLENTLNYGLERVWTIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEIVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVAIASDSSFYILKYNRDVVASYLDSGNPVDEQGVEDAFELLHEMSERVRTGIWVGDCFIYSNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHQNSVARFLESRGMIEDALEVATDPDYRFDLAMQLGKLEVAKGIATEVQSEPKWKQLGELAMSSGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGLSKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKSVETRGVYPPAEEYVNHAGKSHVTLVEAFRNMQIEGEQPLENGESSHELAEHNGEEDHTEEHEEQNGEEGSQEEGVVVDADSTDGAVLINGNEADEDWSANNKEDPST* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2092 919 Gene3D - 590 798 - -
Lja3g2092 919 PIRSF Beta'-COP 2 887 IPR016453 -
Lja3g2092 919 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Lja3g2092 919 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Lja3g2092 919 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Lja3g2092 919 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Lja3g2092 919 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Lja3g2092 919 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Lja3g2092 919 MobiDBLite consensus disorder prediction 850 919 - -
Lja3g2092 919 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lja3g2092 919 PANTHER COATOMER SUBUNIT BETA' 1 873 - -
Lja3g2092 919 MobiDBLite consensus disorder prediction 852 871 - -
Lja3g2092 919 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Lja3g2092 919 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Lja3g2092 919 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Lja3g2092 919 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Lja3g2092 919 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Lja3g2092 919 CDD WD40 17 297 - -
Lja3g2092 919 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Lja3g2092 919 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Lja3g2092 919 PANTHER COATOMER 1 873 - -
Lja3g2092 919 SUPERFAMILY WD40 repeat-like 227 491 IPR036322 GO:0005515
Lja3g2092 919 SMART WD40_4 46 85 IPR001680 GO:0005515
Lja3g2092 919 SMART WD40_4 218 257 IPR001680 GO:0005515
Lja3g2092 919 SMART WD40_4 174 215 IPR001680 GO:0005515
Lja3g2092 919 SMART WD40_4 4 43 IPR001680 GO:0005515
Lja3g2092 919 SMART WD40_4 88 127 IPR001680 GO:0005515
Lja3g2092 919 SMART WD40_4 131 171 IPR001680 GO:0005515
Lja3g2092 919 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Lja3g2092 919 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Lja3g2092 919 Gene3D - 11 300 IPR015943 GO:0005515
Lja3g2092 919 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2092 Lja-Chr3 24379210 24389880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2092 51 309 Miscellaneous Gene Families AT5G08390 24.528 1.49e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2092 K17302 - gmx:100797508 1717.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2092 3 24379210 24389880 Lja3g2092 3 24379210 24389880 ECH
Lja3g5140 3 93737017 93748044 Lja3g2092 3 24379210 24389880 PCT