Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5076 ATGGACAGAAACAATTCCCGTAGACAAGTTGCTGCAGTGAAACAGTCCCTCTTTGATCAGGGTCATCTGGATGAGCAGTTTATTCAACTTGAAGAATTGCAGGATGATGCTAACCCAAATTTTGTTGAGGAAATAGTGACTCTTTACTACCGCGATTCATCAAGACTTGTATCAAGCTTGGAGCATACACTGGAGAGGAACCCAGTGGATTTCAATAAGCTGGACACAATTATGCATCAGTTTAAAGGAAGCAGCTCAAGCATAGGGGCCAAAAAGGTGAAAGCAGAATGCACTCTGTTTAGTCAATATTGCAAGGCAGGAAATGCAGAAGGATGCAGGAAGAGCTTCCAACAAATGAAGAAAGAATATTCAGCACTGAGAAAGAAACTTGAAACTTATTTTCAGCTAGCTAGGCAAGCTGGTCCCTTGGACAGAGCATGTCGCCCCAAGTGA 453 0.4283 MDRNNSRRQVAAVKQSLFDQGHLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLVSSLEHTLERNPVDFNKLDTIMHQFKGSSSSIGAKKVKAECTLFSQYCKAGNAEGCRKSFQQMKKEYSALRKKLETYFQLARQAGPLDRACRPK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5076 150 Gene3D HPT domain 1 144 IPR036641 GO:0000160
Lja3g5076 150 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 4 3 146 - -
Lja3g5076 150 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 7 139 IPR036641 GO:0000160
Lja3g5076 150 Pfam Hpt domain 44 127 IPR008207 GO:0000160
Lja3g5076 150 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 133 IPR008207 GO:0000160
Lja3g5076 150 PANTHER - 3 146 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5076 Lja-Chr3 93085763 93087287 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5076 K14490 - gmx:100800310 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2007 3 23228188 23229691 Lja3g5076 3 93085763 93087287 ECH
Lja3g5076 3 93085763 93087287 Lja3g5076 3 93085763 93087287 ECH
Lja3g5076 3 93085763 93087287 Lja3g2007 3 23228188 23229691 PCT