Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5068 ATGAGACTCCTCAGAACCATCTTCATCCAACACAAGCACCACCTCCTCCACCCCAAACGCTGCATTTCATCTCTCTTTTCCCACCCCTTTTCTTCAACCAGCGACGCCGACAATAAGGGCACCGGTTGGAGCAGTTACGGCGGCATTTTTGACCCCCCAGTTGCGCAGCAAAGACCAAATGATCACAGTGACGCCAAAGTTGGAAAGCCAACCCCAAGTGATCACAGTGACACTGAAGTAGAAGACATTCCGCGGGAGAATCCAACCCCAACTGGGAGGGTGAAGAAGGTGCAGGGTGGAGGAGGAGTGGGGAGGAAATCTGGGAAGGTGAAAACTCAGTGGGTTTGTATTAACTGTGGCCATGAAGCAGGGCAATGGTGGGGGACTTGCGCCTCGTGCGACATGGTTGGCACTATGAAAGTGTTTCATGAGCCCAAGTTAGGTGATGCTGATGACAAGGCTAGAAATTGGTTAGCTGATGTTGTGGGCTCGTGGCTCCCGCAGAGACCGGATCAGTTGCGGCCCATGAAATTAGGCGAGGTTAACCGAGGATTTAATCAGCAGGATTGGAGAATTCCTTTGTCTGGTCCTTTTGGAGATGAAGTTTCCAGAGTGCTTGGTGGTGGTCTTGTACCAGGCTCTTTGACTTTAGTTAGCGGTGATCCTGGTGTTGGGAAGAGTACATTGTTGTTGCAGGTGGCAGCAATGATAGCAGATGGGCACAAGGGTGGTGAAGCTTCTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGGCCACAGAGCAGATCGCCTTGGGATTAAATCTGATATTTATTTATATTCCAGTACTGATATTGAGGATCTATTGAAGAAAGCACAGTCTCTTTCCCCGCGTGCTCTGGTTGTTGATTCAATACAAACTGTTTATTCGAAAGCAATAGCAGCTAGTGCTGGAGGGCCTGTGCAGGTGAAGGAGTGTACTTGGGCTTTGATGCGATTTGCAAAAACAACAAACATCCCAGTTCTTTTGATTGGACATGTGACAAAATCTGGGGATATAGCGGGGCCTCGTCTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGTGAGAGGTACACTACCTATCGAATGCTTCGGGCAGTAAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACAATTAGGATTCCGGGCGGTTTCAAATGCCAGTGAAATGTTTCTCACGGAACAAGACTCTGGTTCTGATGTTTTAGCTGGGTTAGCTATTACTGTAATAATGGATGGTTCAAGAGCTTTCGTGATTGAAATTCAGGCACTTTGCCTTCCAAAATCCTCTGTATCATCTCCACAGCTAGTTGGGATCCAAACAAATAGAGCTAATATGATCAAATGTGTTCTTATAAAGCAAGCGGGTCTCCATCTCCAAGAAAATGTTTTGTTTTTAAATGTTGTTGGTGGAATGAAATTGGAAGAGAGTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATGCCAAAGGACATTGCGTTCATTGGTGAAATTGGCCTTAGTGGAGAGCTTCGCACGGTTCCTAGAATTGAGAAAAGGATACACACAGTGGCAAAGCTGGGTTACAGAATGTGTGTAGTGCCGAAGCAAGTTGAAAAAGTTTTAGGAACTGTAGGTATAGAAAACATGCAAGTTGTATGTTGCAGGAATCTGAAAGAGTTTATTAACACTGTGTTCAGATGA 1770 0.4571 MRLLRTIFIQHKHHLLHPKRCISSLFSHPFSSTSDADNKGTGWSSYGGIFDPPVAQQRPNDHSDAKVGKPTPSDHSDTEVEDIPRENPTPTGRVKKVQGGGGVGRKSGKVKTQWVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADDKARNWLADVVGSWLPQRPDQLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGDPGVGKSTLLLQVAAMIADGHKGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSSTDIEDLLKKAQSLSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVLLIGHVTKSGDIAGPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLGFRAVSNASEMFLTEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSVSSPQLVGIQTNRANMIKCVLIKQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFPMPKDIAFIGEIGLSGELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIENMQVVCCRNLKEFINTVFR* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5068 589 Gene3D - 200 397 IPR027417 -
Lja3g5068 589 MobiDBLite consensus disorder prediction 62 89 - -
Lja3g5068 589 Gene3D - 411 589 IPR014721 -
Lja3g5068 589 SUPERFAMILY Ribosomal protein S5 domain 2-like 381 588 IPR020568 -
Lja3g5068 589 ProSiteProfiles RecA family profile 1. 191 344 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lja3g5068 589 PRINTS DNA repair protein radA signature 450 473 - -
Lja3g5068 589 PRINTS DNA repair protein radA signature 204 232 - -
Lja3g5068 589 PRINTS DNA repair protein radA signature 116 140 - -
Lja3g5068 589 PRINTS DNA repair protein radA signature 300 324 - -
Lja3g5068 589 PRINTS DNA repair protein radA signature 339 367 - -
Lja3g5068 589 PRINTS DNA repair protein radA signature 374 400 - -
Lja3g5068 589 Pfam AAA domain 205 348 - -
Lja3g5068 589 SMART AAA_5 212 370 IPR003593 -
Lja3g5068 589 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 588 - -
Lja3g5068 589 Pfam Subunit ChlI of Mg-chelatase 474 559 - -
Lja3g5068 589 MobiDBLite consensus disorder prediction 43 107 - -
Lja3g5068 589 TIGRFAM sms: DNA repair protein RadA 109 579 IPR004504 GO:0003684|GO:0005524|GO:0006281
Lja3g5068 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 395 IPR027417 -
Lja3g5068 589 PANTHER DNA REPAIR PROTEIN RADA 1 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5068 Lja-Chr3 92911765 92922472 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5068 K04485 - gmx:100791181 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5068 3 92911765 92922472 Lja3g5068 3 92911765 92922472 ECH
Lja3g5068 3 92911765 92922472 Lja3g1995 3 23058745 23066219 PCT