Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1995 ATGGTTCACATATCACCACTTGGAGTTTATGGACATTCCTGTTTTTGTGAGACTGGTCCTTTTGGAAATGAAGTTTCTAGAGTGCTTGGTGGTGGTCTTGTACCAGGCTCATTGACTCTAGTTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTGTTGTTGCAGATTGCTGCGATAATTGCAGAAGGGAACAATGATGGTGGAGCATCTCCAGTTGTGTATGTCTCTGGTGAAGAGAGCGTTGAGCAAATTGGTAATAGAGCAGATCGCCTTTGCCTTGGGATTGGATCAGATATTTATTTATATTCAAGTAATGATATTGAGGACATATTGAAGATAGCTCAGCATCTCTCCCCTGGGGCCCTAGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAATGGGAAGTCCGGGAGGGATTATGCAGGTTAAGGAATGTACTTCAGCTTTATTGCGATTTGCGAAGAAGACGAACATCCCGGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGGCCTCGTGTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGTGAGAAGTTCTCTTCCCATCGTATGCTTCGAGCTGTGAAAAATAGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCAGTTTCAAATGCTAGTGAAATGTTTCTAAGTGAGCAACACCTAGATTCAGAAATTTTAGCTGGACTAGCTGTGGCTGTAATAATGGATGGGTCCCGAACATTTCTGATTGAAATTCAGGCGCTCTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAAGCAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCAAGAACATGCTGTGTTTCTGAATGTTGTTAGTGGATTGACGCTGGCTGAGACTGCAGGAGATCTTGCAGTAGCAGCTGCAATTTGCAGCAGTTGCTTGGAGCTCCCTATTCCAAACGACATCGCATTCATCGGTGAAATTGGTCTTGGCGGTGAGCTTCGCATGGTTCCTAGAATGGAAAAAAGGATGTACACAGTGGCAAAATTGGGTTACAGAATGTGTATTGTCCCGAAGGCAGCTGAAAAAGCTTCAGGAGCTGAAGGTTTAGAAAACATGAAAGTTGTTGGTTGCAGGAATCTGAAAGACGTTATTAACACTGTATTTCCCAATGTAATGAGAAGAAGATAG 1254 0.425 MVHISPLGVYGHSCFCETGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAIIAEGNNDGGASPVVYVSGEESVEQIGNRADRLCLGIGSDIYLYSSNDIEDILKIAQHLSPGALVVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKFSSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLAETAGDLAVAAAICSSCLELPIPNDIAFIGEIGLGGELRMVPRMEKRMYTVAKLGYRMCIVPKAAEKASGAEGLENMKVVGCRNLKDVINTVFPNVMRRR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1995 417 Gene3D - 24 226 IPR027417 -
Lja3g1995 417 TIGRFAM sms: DNA repair protein RadA 23 405 IPR004504 GO:0003684|GO:0005524|GO:0006281
Lja3g1995 417 ProSiteProfiles RecA family profile 1. 6 169 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lja3g1995 417 Gene3D - 245 416 IPR014721 -
Lja3g1995 417 SMART AAA_5 35 195 IPR003593 -
Lja3g1995 417 SUPERFAMILY Ribosomal protein S5 domain 2-like 206 410 IPR020568 -
Lja3g1995 417 Pfam Subunit ChlI of Mg-chelatase 291 381 - -
Lja3g1995 417 PANTHER DNA REPAIR PROTEIN RADA 18 410 - -
Lja3g1995 417 PRINTS DNA repair protein radA signature 125 149 - -
Lja3g1995 417 PRINTS DNA repair protein radA signature 27 55 - -
Lja3g1995 417 PRINTS DNA repair protein radA signature 164 192 - -
Lja3g1995 417 PRINTS DNA repair protein radA signature 274 297 - -
Lja3g1995 417 PRINTS DNA repair protein radA signature 199 225 - -
Lja3g1995 417 PANTHER DNA REPAIR-LIKE PROTEINRADA 18 410 - -
Lja3g1995 417 Pfam AAA domain 28 173 - -
Lja3g1995 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 220 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1995 Lja-Chr3 23058745 23066219 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1995 K04485 - gmx:100794165 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1995 3 23058745 23066219 Lja3g1995 3 23058745 23066219 ECH
Lja3g5068 3 92911765 92922472 Lja3g1995 3 23058745 23066219 PCT