Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5061 ATGAATTTCTTCAAGTGGGTCAACTGGTTCATCATTTTCCTCTGCTTTGCTGCAACACAGATCTTCTCAGATGAACACTCTGCAACCAAGTTTCTGGATTTTGCAAAGGAGCCTCAGGTTTTTGATTGGATGGTGAATATCAGGAGGAAGGTTCATGAGAATCCAGAACTGGGTTATGAGGAATTTGAGACTAGTAAGCTGATTAGAGCAGAATTGGATAAATTGGGTATCACATATAAACATCCAGTTGCAGTTACAGGTGTTATTGGCTTCATAGGGACTGGACTTCCCCCTTTTGTTGCAATTAGGGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAACATAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGTCATGATGCTCATGTTACTATGCTTCTAGGTGCTGCAAAGATCCTCAAGGAGCACGAAAAAGAGATAAGGGGAACTGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCCGGGGCCTTAGAAAATGTCTCTGCGATATTTGGATTGCACGTCTCACATAGAGTACCAGTAGGTGAAGTGGCCTACAGGTCTGGTCCTATGTTTGCAGGAAGCGCTTTCTTTGAAGCAGTAATAAGTGGAAGGGGAGGCCATGCAGCTATTCCTCAGCATTCTATAGACCCCATATTGGCAGCTTCCAATGTGATTGTTAGCTTACAACATATTGTTTCTCGCGAGGCTGATCCTCTTGACTCCCAGGTTTTGACTGTAGCAAAATTTCAAGGAGGTGGTGCTTTCAATGTCATTCCAGACTCTGTCACAATTGGTGGCACCTTCCGAGCCTTTTCAGATGAAAGTATCATGCAAATGAGACATCGGATTGAACAGGTTATCATTGGACAAGCTGCTGTGCAGAGGTGCAATGCAACAGTCAGCTTCCTTGATGAAGAGAAACCTTTCTTCCCTCCAACAGTAAACAATGGTGACTTGCATGAGCATTTTCAAAGTGTTGCTAAGAGCTTGCTTGGCGTCAATAAAGTAAATGGCATGGAACCATTGATGGGATCTGAGGACTTTTCATTCTACCAACAAGTTATTCCCGGATACTTCTTCATGCTTGGAATGGAGAATGCTTCTATTGGACATTTTGAGTCACCACACTCTCCATATTTCAAAGTCAATGAAGATGCACTTCCTTATGGAGCTGCACTTCATGCATCATTAGCTACTAGATATCTTCTCACATATCATCAGGACATACCAATAACAAAGGGAAATTCTCATGATGAATTATAA 1314 0.4254 MNFFKWVNWFIIFLCFAATQIFSDEHSATKFLDFAKEPQVFDWMVNIRRKVHENPELGYEEFETSKLIRAELDKLGITYKHPVAVTGVIGFIGTGLPPFVAIRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKEHEKEIRGTVVLVFQPAEEGGGGAKKILDAGALENVSAIFGLHVSHRVPVGEVAYRSGPMFAGSAFFEAVISGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREADPLDSQVLTVAKFQGGGAFNVIPDSVTIGGTFRAFSDESIMQMRHRIEQVIIGQAAVQRCNATVSFLDEEKPFFPPTVNNGDLHEHFQSVAKSLLGVNKVNGMEPLMGSEDFSFYQQVIPGYFFMLGMENASIGHFESPHSPYFKVNEDALPYGAALHASLATRYLLTYHQDIPITKGNSHDEL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5061 437 Pfam Peptidase family M20/M25/M40 101 415 IPR002933 GO:0016787
Lja3g5061 437 Gene3D - 209 327 - -
Lja3g5061 437 SUPERFAMILY Zn-dependent exopeptidases 39 419 - -
Lja3g5061 437 TIGRFAM amidohydrolases: amidohydrolase 44 406 IPR017439 GO:0016787
Lja3g5061 437 PIRSF Amidohydrol_AmhX 30 422 IPR017439 GO:0016787
Lja3g5061 437 CDD M20_IAA_Hyd 44 419 IPR044757 GO:0009850|GO:0016787
Lja3g5061 437 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 437 IPR017439 GO:0016787
Lja3g5061 437 Pfam Peptidase dimerisation domain 210 304 IPR011650 -
Lja3g5061 437 Gene3D Zn peptidases 44 404 - -
Lja3g5061 437 PANTHER AUXIN CONJUGATE HYDROLASE 1 437 - -
Lja3g5061 437 SUPERFAMILY Bacterial exopeptidase dimerisation domain 209 328 IPR036264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5061 Lja-Chr3 92800915 92805846 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5061 K21604 - gmx:100794121 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5061 3 92800915 92805846 Lja3g5061 3 92800915 92805846 ECH
Lja3g5061 3 92800915 92805846 Lja3g1465 3 15503235 15504607 PCT