Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5051 ATGGACGGTGGTGCCGATGAGGTTGTCGCACCAGCAGCTCCGGCGGGTCCACCGCACCCTCTCGACTGGAAATTCTCCCAGGTTTTCGGTGAACGTGCGGCTGGGGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGCGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTGGTTCTCTTTGAGAGGACAGATGCAAAAGATCATGGTGGATCAAGAAGGGATTTGGAGAGTATGGACTATTCTATTGGTAGGCATCCTGAATTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATAGTGCCCTTTTCCTTCTCTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTGCTGAAATGAATGTTGATCCTTCAAAAAATATGGGAAATGGCTGTATTGCTAGTTCAAGTAATTCAAATAGTCCTAGACCATCTCTTTCGAATGGTGGATCTCCAGATAGATCATGCAATTATCCAAGCAATGACTTCTCATTTCCACCAGGGGGCATACCATCACTGAGATTACCCGTGGTAGTAAGTAACCATGAGAGCAGCTTGGTGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGACTATCATATCAATTCTATTTCAAATAACAGCGATGGTGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTCTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATATGTTGGCGTATAGCAGTTCAAAGGGTTCAATTCGTCTGGTTGACTTGCGCCAATCAGCTTTATGCGATTCTCATTCCAAACTATTTGAGGAACAGGAAGCCCCAGGCTCCAGGTCATTCTTCACAGAGATTATTGCTTCTATCTCGGACATAAAATTTGGGAATGATGGAAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTATGGGACATTAATATGGACTCCGGGCCTGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCTAAGCTTTGTGATTTGTATGAAAATGATTCAATTTTCGATAAGTTCGAGTGTTGTCTGAGTGGTGATGGATTGCGGGTAGCCACTGGTTCATACAGTAATTTATTCCGTGTATTTGGTTGTGCCCCTGGAAGTGCTGAGGCTACAACTTTAGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCTAGATCACTGGGAAATAGCATAACACGAATTGGAAGACGGGGAGCAGAAACCCCTGGGGTTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTGGCATGGCATCCAACTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTACGCGTGA 1560 0.4237 MDGGADEVVAPAAPAGPPHPLDWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKDHGGSRRDLESMDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANSALFLLSTNDKTIKFWKVQEKKVKKIAEMNVDPSKNMGNGCIASSSNSNSPRPSLSNGGSPDRSCNYPSNDFSFPPGGIPSLRLPVVVSNHESSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFGNDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSITRIGRRGAETPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5051 519 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 108 122 IPR018067 -
Lja3g5051 519 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 6 519 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PIRSF PPA2_B55 15 519 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 MobiDBLite consensus disorder prediction 447 467 - -
Lja3g5051 519 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Lja3g5051 519 Gene3D - 82 517 IPR015943 GO:0005515
Lja3g5051 519 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 236 250 IPR018067 -
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 266 293 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 95 123 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 238 265 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 405 431 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 323 350 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 124 152 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 294 322 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 379 404 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 488 517 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 351 378 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 48 68 IPR000009 GO:0000159|GO:0019888
Lja3g5051 519 SUPERFAMILY WD40 repeat-like 42 511 IPR036322 GO:0005515
Lja3g5051 519 MobiDBLite consensus disorder prediction 168 198 - -
Lja3g5051 519 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 6 519 - -
Lja3g5051 519 SMART WD40_4 34 69 IPR001680 GO:0005515
Lja3g5051 519 SMART WD40_4 336 374 IPR001680 GO:0005515
Lja3g5051 519 SMART WD40_4 378 432 IPR001680 GO:0005515
Lja3g5051 519 SMART WD40_4 277 317 IPR001680 GO:0005515
Lja3g5051 519 SMART WD40_4 108 148 IPR001680 GO:0005515
Lja3g5051 519 SMART WD40_4 227 266 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5051 Lja-Chr3 92677146 92691915 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5051 K04354 - gmx:100799449 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1478 3 15711722 15720498 Lja3g5051 3 92677146 92691915 ECH
Lja3g5051 3 92677146 92691915 Lja3g5051 3 92677146 92691915 ECH
Lja3g5051 3 92677146 92691915 Lja3g1478 3 15711722 15720498 PCT