Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1478 ATGAACAACGGTGGCGATGAGGTCGTCGAAGCTCCGCCGGCGGGTCCACCACAGCCGCTGGATTGGAAATTCTCCCAGGTTTTCGGTGAACGCACGGCTGGGGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACGGGTGATCGAGGTGGTCGAGTAGTTCTCTTTGAGCGCACAGATGCAAAAGATCATGTTTCGAGAAGGGATTCGGAGAGGATGGACTATTCAAATGTTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCTAATGGTGCTCTCTTCCTTTTATCTACAAATGATAAAACAATTAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAAAAAATTACTGACTTGAATGTTGACCCTTCAAAAGCAATGGGAAATGGTTCTATTGCTAGTTCAAGTAATTCCAGTAGCTCTAGGCCATATCTTGCAAATGGAGAGTCTCCAGAAAGATCGCACAGTTATCTAAGCACTGATTTCTCATTTCCACCAGGAGGCATACCTTCGCTAAGATTACCCTTGGTAACCAGCCATGAGACCAGTCTGTTGGCTCGTTGTCGTCGAGTGTATGCACATGCTCATGATTATCATATCAATTCTATTTCCAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTTGAAATTAGCAACCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTAACTGAGGTTATAACATCAGCGGAATTTCACCCTACACATTGTAATACATTAGCGTATAGCAGTTCAAAGGGTTCAATTCGTCTGATTGACTTGCGGCAGTCAGCCTTATGTGATTCTCATGCCAAACTATTTGAGGAGCAGGAGGCCCCAGGGTCTAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGCAAAGGATGGAAGATATATACTCAGTCGTGATTATATGACTCTAAAGTTATGGGACATCAACATGGATTCAGGCCCAGTTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAAGCTTTGTGATTTATATGAAAACGATTCAATTTTTGACAAGTTTGAGTGTTGTCTGAGTGGTGATGGATCACGTGTTTCAACTGGTTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGCCCCGGGAAGTACTGAGGCTACGACTTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCCAACTCCTTCAAGGCCTGCTAGATCACTGGGGAACAGTATAACTAGAGTTGTAAGACGTGGAGCTGAAAGCTCTGGTGTTGATGCAAATGGGAATTCTTTTGATTTCACGACAAAGTTGCTGCACTTGGCGTGGCACCCAACTGAAAATTCAATTGCTTGCGCTGCTGCGAATAGCTTATACATGTACTATGCTTGA 1554 0.4208 MNNGGDEVVEAPPAGPPQPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKDHVSRRDSERMDYSNVGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKYWKVQEKKVKKITDLNVDPSKAMGNGSIASSSNSSSSRPYLANGESPERSHSYLSTDFSFPPGGIPSLRLPLVTSHETSLLARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGSRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPARSLGNSITRVVRRGAESSGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1478 517 MobiDBLite consensus disorder prediction 167 192 - -
Lja3g1478 517 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 234 248 IPR018067 -
Lja3g1478 517 Gene3D - 69 515 IPR015943 GO:0005515
Lja3g1478 517 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g1478 517 SMART WD40_4 275 315 IPR001680 GO:0005515
Lja3g1478 517 SMART WD40_4 334 372 IPR001680 GO:0005515
Lja3g1478 517 SMART WD40_4 107 147 IPR001680 GO:0005515
Lja3g1478 517 SMART WD40_4 33 68 IPR001680 GO:0005515
Lja3g1478 517 SMART WD40_4 225 264 IPR001680 GO:0005515
Lja3g1478 517 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 517 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 SUPERFAMILY WD40 repeat-like 41 509 IPR036322 GO:0005515
Lja3g1478 517 Pfam WD domain, G-beta repeat 228 264 IPR001680 GO:0005515
Lja3g1478 517 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 107 121 IPR018067 -
Lja3g1478 517 MobiDBLite consensus disorder prediction 166 192 - -
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 292 320 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 377 402 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 486 515 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 264 291 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 321 348 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 349 376 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 47 67 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 403 429 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 123 151 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 236 263 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 94 122 IPR000009 GO:0000159|GO:0019888
Lja3g1478 517 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 517 - -
Lja3g1478 517 PIRSF PPA2_B55 14 517 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1478 Lja-Chr3 15711722 15720498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1478 K04354 - gmx:100799449 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1478 3 15711722 15720498 Lja3g5051 3 92677146 92691915 ECH
Lja3g1478 3 15711722 15720498 Lja3g1478 3 15711722 15720498 ECH
Lja3g5051 3 92677146 92691915 Lja3g1478 3 15711722 15720498 PCT