Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5024 ATGACTATCTCTTCAATTTTCTTGGTAGCTCTATTCTCTCTCATTTATGGCAATGCTGTTCTTCCTATTGAAGCTACCCACCATGTTTATAATCTTCAGAGTTTATCTACTTATTCCTCTAAACAACCTTATAGAACTGCTTATCACTTTCAACCTCTCAAGAATTGGATAAATGACCCAAATGGACCATTGTGGTATGGAGGACTATACCATATGTTTTATCAATACAATCCTAAAGGAGCAGTTTGGGGAAATATTGTCTGGGCCCACTCTGTATCAGAGGATCTTGTGAATTGGAGGCCATTAGATCATGCCATCTCCCCTTCTCAGCCAGCAGATATCAATGGATGTTGGTCAGGTTCAGCAACAATTCTTCCTGGAGGCAAACCAGCCATGTTATACACAGGAATTGACCCCAACAAACACCAAGTTCAAAACTTAGCCATCCCCAAAAACATGTCTGACCCATTACTTAGGGAATGGGTTAAGTCACCAAAAAATCCCTTAATGGCACCTACCATTGCTAACAAGATAAATTCAAGCTCATTTAGAGACCCTACCACTGCTTGGCTAGGAAAAGATGGGTACTGGAGGGTGCTGATTGGAAGCAAAACTAACACAAGGGGTGAGGCAATTATGTACAAGAGCAAAAACTTTGTTAATTGGGTTCAAGCCAAATACCCTCTTCATTCAGCTGAAGGCACTGGAATGTGGGAGTGCCCTGATTTCTATCCAGTGCTGAATAAGATCCCATTTGCCTTTGGTCTTGATACTTCTGTGAATGGTAATGATGTTAGACATGTGCTCAAGGTTAGTTTGGATGATACAAAACATGATCACTATTTGATTGGGAGTTATGACACTGCCAAGGATAACTTCATTCCTGATAAGGGGTTTGAGGATAACAAATCTGTCTTGAGATATGATTATGGGAAATACTATGCCTCAAAAACTTTTTTTGATGATGGAAAGAACAGAAGGATCTTGTTGGGTTGGGTTAATGAATCCTCAAGTGTTGCAGATGATATCAAGAAAGGATGGTCTGGAATCCACACTATTCCAAGGGCTATCTGGCTTCATAAATCAGGAAAACAGTTGGTGCAATGGCCGGTTGTGGAAATTGAGAAACTACGTATGAACCCAGTCTATTGGCCAGCCAAAAAGGTCAAGGGAGGTGAACTGCTTCAAGTTGCTGGTGTTAATGCAGTACAGTCTGATGTTGAAATTTCATTTGAAGTAAATGAGATTGGGAAGGCCGAAGTATTGGACCATTGGATTGATCCCCAAATTCTGTGTAGTAGAAAGGGTGCAGCCGTAAAAGGAGCTGTGGGACCATTTGGTCTGCTGGTGTTTGCTTCACAAGGCTTGAAAGAATACACAGCAGTGTTTTTCAGAATATTCAAATACCAACATCAAAATTTGGTTCTCATGTGTAGTGACCAAAGCAGGTCTTCTTTGAATAAAGATAACGATATGACCACTTATGGAACTTTTCTAGATGTTGACCCGCTTCATGAGAAGTTGTCACTAAGAACTTTGATTGATCACTCAGTAGTAGAGAGTTTTGGTGGAGAAGGAAAGGCATGCATCACAGCCAGAGTTTACCCCACATTAGCAATCAATGATAAGGCAAAGCTATATGCATTCAATTATGGAACTACCGCTGTGAAGATCACAAGATTGAGTGCTTGGAGCATGAAGAAAGCAAAAGTCAACTGA 1719 0.4066 MTISSIFLVALFSLIYGNAVLPIEATHHVYNLQSLSTYSSKQPYRTAYHFQPLKNWINDPNGPLWYGGLYHMFYQYNPKGAVWGNIVWAHSVSEDLVNWRPLDHAISPSQPADINGCWSGSATILPGGKPAMLYTGIDPNKHQVQNLAIPKNMSDPLLREWVKSPKNPLMAPTIANKINSSSFRDPTTAWLGKDGYWRVLIGSKTNTRGEAIMYKSKNFVNWVQAKYPLHSAEGTGMWECPDFYPVLNKIPFAFGLDTSVNGNDVRHVLKVSLDDTKHDHYLIGSYDTAKDNFIPDKGFEDNKSVLRYDYGKYYASKTFFDDGKNRRILLGWVNESSSVADDIKKGWSGIHTIPRAIWLHKSGKQLVQWPVVEIEKLRMNPVYWPAKKVKGGELLQVAGVNAVQSDVEISFEVNEIGKAEVLDHWIDPQILCSRKGAAVKGAVGPFGLLVFASQGLKEYTAVFFRIFKYQHQNLVLMCSDQSRSSLNKDNDMTTYGTFLDVDPLHEKLSLRTLIDHSVVESFGGEGKACITARVYPTLAINDKAKLYAFNYGTTAVKITRLSAWSMKKAKVN* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5024 572 CDD GH32_Fruct1-like 55 359 - -
Lja3g5024 572 ProSitePatterns Glycosyl hydrolases family 32 active site. 49 62 IPR018053 GO:0004553|GO:0005975
Lja3g5024 572 SUPERFAMILY Concanavalin A-like lectins/glucanases 370 568 IPR013320 -
Lja3g5024 572 Gene3D - 381 566 - -
Lja3g5024 572 PANTHER CELL-WALL INVERTASE 2 572 - -
Lja3g5024 572 Pfam Glycosyl hydrolases family 32 N-terminal domain 49 370 IPR013148 -
Lja3g5024 572 Gene3D Glycosyl hydrolase domain; family 43 54 380 IPR023296 -
Lja3g5024 572 Pfam Glycosyl hydrolases family 32 C terminal 373 565 IPR013189 -
Lja3g5024 572 SUPERFAMILY Arabinanase/levansucrase/invertase 40 371 IPR023296 -
Lja3g5024 572 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 572 - -
Lja3g5024 572 SMART glyco_32 49 526 IPR001362 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5024 Lja-Chr3 92417741 92422510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5024 66 572 Glycoside Hydrolase AT3G13790 62.330 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5024 K01193 - gmx:100783003 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5024 3 92417741 92422510 Lja3g1507 3 16190780 16197480 PCT