Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1507 ATGACTACCTCTACTATCTGTCTCTTGGCTCTACTCTGTATCATTTATTCTACTGGTGTTCTTCCTGTTGAAGCTACCCACCATGTTGACAGAAATCTTCAGAGCCTAACTTCTGACTCCTCCAATCAACCTTATAGAACTGCTTACCACTTTCAACCTCCCAAGAATTGGATAAATGATCCTAATGGACCATTGGCATACAAGGGACTCTATCACCTGTTCTATCAATACAATCCTAAAGGAGCAGTGTGGGGAAACATCGTATGGGCCCACTCCGTATCAACGGATCTCGTGAACTGGACCCCACTAGACCCCGCCATCTTCCCATCTCAACCGTCCGATATTAACGGCTGTTGGTCAGGGTCAACCACAATCCTACCCGGGGGCAAACCCGCCATTTTATACACTGGCATTGACCCAATGAACCAACAAGTCCAAAACCTGGCCCACCCCAAAAACCTGTCTGATCCATTTCTTAGGGAATGGGTTAAGTCACCAAAAAATCCTCTAATGGCACCAACAATTGCTAACAAGATCAATGCAAGTTCATTCAGAGACCCTACAACTGCTTGGTTAGGCAAAGATGGACATTGGAGACTGCTTGTTGGGAGCAAAAAGAACACTAGGGGGATGGCAATTTTGTATAGGAGCAAAGATTTTGTTAATTGGGTTCGAGCCAAACATCCGTTACATTCCGAAAAAGGAACCGGAATGTGGGAGTGTCCTGATTTTTTTCCGGTTTTGCGTGTCGGCCCGCTAGGTATTGACACGTCTGTGGACGGTGTTCAAGTCAGGCACGTGCTCAAGGTTAGCTTGGATGATAAGAAACATGATTACTACGTGATTGGGAGTTATGATGCTGAGAAGGATAATTTTGTCCCGGATAATAATAAAGGGTTTGAGGGTGATGTTGGGACGGTTTTGAGATATGATTATGGGAAATACTATGCGTCCAAAACTTTCTTTGATGATGAGAAGAATAGGAGGGTTTTGCTTGGTTGGGTCAATGAGTCATCTAGTGTTGCTGATGATATCAAGAAAGGGTGGTCTGGAATCCATACAATTCCAAGAGCTATCTGGCTGCATAAGTCTGGTAAACAGTTGATACAGTGGCCTGTGGTGGAAATTGAAAAGCTACGTGCAAACCCTATCAACTGGCCCACCAAAGTGCTCAAGGGAGGTGACCTACTTCAAATTAATGGTGTAACAGCAGCACAGGCTGATGTTGAAATTTCATTTGAAGTAAAAGAGTTTGGAAAGGCTGAAGTTTTGGAGTCTTGGAAGGACCCACAAATTCTGTGTAGCCGAAAGGGTTCAGCCGTTAGAAGTGGACTGGGACCTTTTGGTCTGCTAGTTTTTGCTTCAAAGGGATTGCAAGAGTATACGGCAGTTTTCTTCAGAATATTTAGATACCATCACAAAAATTTGGTGCTCATGTGCAGTGACCAAAGCAGGTCTTCCCTGAATAAAGAAAATGATAGGACCACTTATGGAACTTTTGTTGATGTGAACATTATTTATGAGAAGCTGTCATTGAGAGCCTTGATTGATCACTCTGTTGTGGAGAGTTTTGGAGGAGAAGGAAAGGCTTGCATCACAGCCAGAGTTTATCCCACATTGGCCATAAATGATAAAGCACAAATTTACGCTTTTAACAATGGAACTGCTGATGTCAAGATCGCGAGATTGAGCGCTTGGAGCATGAAGAAAGCTCAAATAAGCTAA 1725 0.4354 MTTSTICLLALLCIIYSTGVLPVEATHHVDRNLQSLTSDSSNQPYRTAYHFQPPKNWINDPNGPLAYKGLYHLFYQYNPKGAVWGNIVWAHSVSTDLVNWTPLDPAIFPSQPSDINGCWSGSTTILPGGKPAILYTGIDPMNQQVQNLAHPKNLSDPFLREWVKSPKNPLMAPTIANKINASSFRDPTTAWLGKDGHWRLLVGSKKNTRGMAILYRSKDFVNWVRAKHPLHSEKGTGMWECPDFFPVLRVGPLGIDTSVDGVQVRHVLKVSLDDKKHDYYVIGSYDAEKDNFVPDNNKGFEGDVGTVLRYDYGKYYASKTFFDDEKNRRVLLGWVNESSSVADDIKKGWSGIHTIPRAIWLHKSGKQLIQWPVVEIEKLRANPINWPTKVLKGGDLLQINGVTAAQADVEISFEVKEFGKAEVLESWKDPQILCSRKGSAVRSGLGPFGLLVFASKGLQEYTAVFFRIFRYHHKNLVLMCSDQSRSSLNKENDRTTYGTFVDVNIIYEKLSLRALIDHSVVESFGGEGKACITARVYPTLAINDKAQIYAFNNGTADVKIARLSAWSMKKAQIS* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1507 574 Gene3D - 383 568 - -
Lja3g1507 574 Pfam Glycosyl hydrolases family 32 N-terminal domain 50 372 IPR013148 -
Lja3g1507 574 Gene3D Glycosyl hydrolase domain; family 43 54 382 IPR023296 -
Lja3g1507 574 SUPERFAMILY Arabinanase/levansucrase/invertase 41 373 IPR023296 -
Lja3g1507 574 ProSitePatterns Glycosyl hydrolases family 32 active site. 50 63 IPR018053 GO:0004553|GO:0005975
Lja3g1507 574 PANTHER CELL-WALL INVERTASE 3 573 - -
Lja3g1507 574 Pfam Glycosyl hydrolases family 32 C terminal 375 567 IPR013189 -
Lja3g1507 574 CDD GH32_Fruct1-like 56 361 - -
Lja3g1507 574 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 3 573 - -
Lja3g1507 574 SUPERFAMILY Concanavalin A-like lectins/glucanases 372 570 IPR013320 -
Lja3g1507 574 SMART glyco_32 50 528 IPR001362 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1507 Lja-Chr3 16190780 16197480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1507 65 574 Glycoside Hydrolase AT3G13790 66.795 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1507 K01193 - gmx:100776791 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5024 3 92417741 92422510 Lja3g1507 3 16190780 16197480 PCT