Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5008 ATGTTTTCGGGGGTGCATGGGATGCTGAATAGGGGGCAGAAGATAAAAGGGACGGTGGTGCTGATGCGGAAGAATGTGTTGGATATAAACAGCCTCACCAGTGTTGGTGGAGTCATCGGTTCAGGCCTCGACATCCTTGGTTCCACAGTTGATAATCTCACTGCTTTCTTAGGCCGATCTGTCTCTCTCCAGTTGATTAGTTCCACCAAAGCTGATGCAAATGGGAAAGGGAAACTTGGAAAGGAAACTTTTCTTGAAGGAGTCATCACTTCGTTGCCAACCTTGGGAGCAGGCCAATCTGCATTCAAAATTCACTTTGAATGGGATGATGACTTTGGAATTCCTGGAGCATTTTACATCAAGAATTTCATGCAAACTGAGTTTTTCCTTGTGAGTTTGATTCTTGAAGACATTCCAAACCATGGAACCATCTACTTTGTTTGCAACTCCTGGATTTACAATGCTAAACACTTCAAAAATGACCGAATTTTCTTTGCCAACACGCCATATCTTCCAAGTGAAACACCAGCTCCATTGGCTCAGTACAGAGAAGAAGAGTTGAAGAATTTGAGAGGAGATGGAACTGGTGAACGTAAAGAATGGGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGGGATCCAGATAAAGGTGAAAAGCATACCCGTCCAGTTCTTGGAGGGTCTGAGACCTATCCTTATCCTCGCAGGTGTAGAACTGGCAGAAAACCATCGAAGAAAGATCCTAATAGTGAGAGCAGGACCAGTGATATTTATCTTCCAAGAGATGAAGCTTTTGGTCACTTGAAGTCATCTGACTTTCTAGTTTATGGATTGAAGTCTGTGTCTCAAGATGTTGTCCCGGCACTACAATCTGTATTTTTTGACTTAAATTTCACGCCGAATGAGTTTGATAGCTTTGATGAAGTTCATGGACTCTATGATGGTGGAATTAAGCTGCCTACAAATGTACTTAGTAAGATTAGTCCATTACCTGTGCTCAAGGAAGTCTTTCGAACCGATGGTGAACAAGCCCTCAAGTTTCCACCGCCTAAAGTAGTTCAAGCAACTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTCGCCGGTGTAAATCCAAATGTGATTCGTTGTCTTAAGGTGTTCCCTCCACCAAGCAAGCTAGACAGTCAAGTCTACGGTGATCATACCAGTAAAATAACCAAAGAACACCTGGAGCCTAACTTAGAAGGCCTCACTGTAGATCAGGCAATTCAAAAAGAGAGATTGTTCATATTGGATCATCATGACTCAATCATGCCATACTTAAGGCGCATAAACTCAACTTCCACAAAGGCTTATGCTACCAGAACCATCCTTTTCTTAAAAGATGATGGAACTTTAAAGCCACTGGTCATAGAGTTGAGTTTGCCACATCCTGACGGAGATCATCATGGTGCTGTTAGTGATATTTACCTGCCTGCAAAAGAAGGTGTTGAAAGTTCTCAGTGGCTACTGGCCAAGGCATATGTGATAGTGAATGACTCATGCTACCATCAACTTGTCAGCCATTGGTTAAATACTCATGCAGTTATTGAGCCATTCGTCATTGCAACTCACAGACATCTTAGCTTTGTTCACCCTATATATAAGCTTCTGTATCCTCACTATCGTGACACCATGAATATAAATTCCCTTGCTCGAGGATCACTGGTCAACGACGGTGGTATCATAGAACAAACATTTTTGTGGGGGCGGTACTCTATGGAAATGTCCTCTGTACTTTACAAGAATTGGGTTTTTATAGAGCAATCACTGCCTGCTGATCTCATAAAAAGAGGAATGGCATATGCGGATTCAGCTTCACCTCATGGCGTTCAACTTGTGATAGAGGACTACCCTTATGCAGTTGATGGACTGGAGATATGGGATGCTATCTGGATATGGGTCAAAGACTACGTCTCCTTGTACTACCCCTCTGATGAAAAACTTCAACAAGATTCTGAACTCCAAGCTTGGTGGAAAGAAATTGTAGAAGTGGGTCATGGTGACAAGAAAGATGGAAAATGGCCTACAATGCAAGCTTGTCATGAACTGATTGAAGCTTGCACTATCATCATATGGATTGCTTCAGCTCTTCATGCAGCTGTTAACTTTGGCCAGTATCCTTATGGCGGTTTAGTCTTGAACCGCCCGACTCTTAGCCGGCGGTTCATGCCGAAGAAAGGAACTCCTGAGTATGATGAGCTGGTCAAGAGCCCTCAGAAGGCTTACTTGAAGACAATCACTCCAAAGTTTCAGACCCTTATTGACCTTTCTGTTATAGAAATCTTGTCAAGACATGCTTCTGATGAGTTGTACCTTGGGGAGAGAGACAATCCAAATTGGACATCTGATTCAAGTGCATTAGAGGCCTTTAAGAAGTTTGGGAACAAGCTTGCTGAAATTGAGAAAAAACTCTCTCAGAGAAACAATGATGAGAAGCTGAGAAACCGTCGTGGACCGGTTCAGATGCCTTATACCCTGCTTTATCCTTCTAGTGATGAAGGATTAACCTTCAGAGGAATTCCCAACAGCATCTCTATCTGA 2583 0.4262 MFSGVHGMLNRGQKIKGTVVLMRKNVLDINSLTSVGGVIGSGLDILGSTVDNLTAFLGRSVSLQLISSTKADANGKGKLGKETFLEGVITSLPTLGAGQSAFKIHFEWDDDFGIPGAFYIKNFMQTEFFLVSLILEDIPNHGTIYFVCNSWIYNAKHFKNDRIFFANTPYLPSETPAPLAQYREEELKNLRGDGTGERKEWERIYDYDVYNDLGDPDKGEKHTRPVLGGSETYPYPRRCRTGRKPSKKDPNSESRTSDIYLPRDEAFGHLKSSDFLVYGLKSVSQDVVPALQSVFFDLNFTPNEFDSFDEVHGLYDGGIKLPTNVLSKISPLPVLKEVFRTDGEQALKFPPPKVVQATKSAWMTDEEFAREMLAGVNPNVIRCLKVFPPPSKLDSQVYGDHTSKITKEHLEPNLEGLTVDQAIQKERLFILDHHDSIMPYLRRINSTSTKAYATRTILFLKDDGTLKPLVIELSLPHPDGDHHGAVSDIYLPAKEGVESSQWLLAKAYVIVNDSCYHQLVSHWLNTHAVIEPFVIATHRHLSFVHPIYKLLYPHYRDTMNINSLARGSLVNDGGIIEQTFLWGRYSMEMSSVLYKNWVFIEQSLPADLIKRGMAYADSASPHGVQLVIEDYPYAVDGLEIWDAIWIWVKDYVSLYYPSDEKLQQDSELQAWWKEIVEVGHGDKKDGKWPTMQACHELIEACTIIIWIASALHAAVNFGQYPYGGLVLNRPTLSRRFMPKKGTPEYDELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDSSALEAFKKFGNKLAEIEKKLSQRNNDEKLRNRRGPVQMPYTLLYPSSDEGLTFRGIPNSISI* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5008 860 Gene3D - 271 359 IPR027433 -
Lja3g5008 860 Gene3D - 360 494 - -
Lja3g5008 860 SMART LH2_4 13 167 IPR001024 GO:0005515
Lja3g5008 860 ProSiteProfiles PLAT domain profile. 41 166 IPR001024 GO:0005515
Lja3g5008 860 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 860 IPR013819 GO:0016702|GO:0046872
Lja3g5008 860 SUPERFAMILY Lipoxigenase 171 860 IPR036226 -
Lja3g5008 860 Gene3D - 171 270 - -
Lja3g5008 860 PRINTS Plant lipoxygenase signature 773 787 IPR001246 GO:0016491
Lja3g5008 860 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Lja3g5008 860 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Lja3g5008 860 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Lja3g5008 860 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Lja3g5008 860 PRINTS Plant lipoxygenase signature 302 323 IPR001246 GO:0016491
Lja3g5008 860 PRINTS Plant lipoxygenase signature 386 405 IPR001246 GO:0016491
Lja3g5008 860 PRINTS Plant lipoxygenase signature 347 363 IPR001246 GO:0016491
Lja3g5008 860 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Lja3g5008 860 PANTHER LIPOXYGENASE 6 860 IPR000907 GO:0016702|GO:0046872
Lja3g5008 860 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Lja3g5008 860 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 6 860 - -
Lja3g5008 860 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 170 IPR036392 GO:0005515
Lja3g5008 860 CDD PLAT_LH2 14 167 IPR042057 -
Lja3g5008 860 Pfam Lipoxygenase 179 843 IPR013819 GO:0016702|GO:0046872
Lja3g5008 860 Gene3D - 495 859 - -
Lja3g5008 860 Pfam PLAT/LH2 domain 68 165 IPR001024 GO:0005515
Lja3g5008 860 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Lja3g5008 860 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Lja3g5008 860 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Lja3g5008 860 Gene3D PLAT/LH2 domain 4 170 - -
Lja3g5008 860 MobiDBLite consensus disorder prediction 216 259 - -
Lja3g5008 860 MobiDBLite consensus disorder prediction 245 259 - -
Lja3g5008 860 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5008 Lja-Chr3 92241630 92246627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5008 1 860 Acyl Lipid Metabolism Gene Families AT1G55020 60.068 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5008 K15718 - gmx:547869 1486.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1537 3 16646842 16652210 Lja3g5008 3 92241630 92246627 PCT