Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1537 ATGTCGCTTAATATTTTGAGCGGCCACAAGATCAAAGGCACGGTGGTGCTGGTGCAAAAGAATGTGCCTGGCGGAGCCACCGATGTACCTCACACTTCCTTCTTAGGCCAATCTGTCTCCTTCCGGTTGATTAGTGCTACCAAAGCTGATAATTCAACCGGGAAAGGAATAGTAGGAAATGCAGCATATTTAGATGGTGTTATCAACAATTTGCCAACCTTGGCACCTGGCCAATCTGCCTTCAACATCTATTTTGATCATGACAGTAACTTCGGAATCCCTGGAGCATTTTATATCAACAACTTTATCACAACTGAGTTCTACCTTGTGAGCTTGACTCTTGAAGGTGTTCCACACCAAGGAAGCCTCCACTTCCATTGCAACTCATGGATTTATAATGCAAACAAGTATCAAACTGATCGCATTTTCTTTGTTAACAATACATATCGACCAGGTAAAACACCAGCTCCACTAGTGTACTACAGAGAAGAAGAATTGAAGACTTTAAGAGGAGATGGAACAGGGGAGCGCCAGGAATGGGAAAGGATCTATGACTATGATTTCTACAATGATTTGGCCGATCCCGACACAAATGACAGTTTGGCTCGTCCAGTTCTTGGAGGATCTACCACTTACCCTTATCCTCGTAGGGGAAGAACCGGCAGACCACCAACAAAAAAAGATCCTAACACTGAGAGCAGGAGCCCTATCTTTTATATTCCAAGAGATGAACTACTTGGTTTCGTGCAATCGCCTGACTTTTTCGCCTATGGACTCAAGTCTATATCCGAAGTGGAACTTCCCGCGTTAGAATCTGCATTCGCAAGAAATTTATCGCCACATGAGTTTCATAGCTTTGAAGACGTGCATGATCTCTTTGAAGAAGGAATTAAGCTTCCTTTAGATGTAATTAGTCAAATTAGTCATGAACCAGTGTTGGAGAAACTCGTCACAACTGATGGTCAGCAGATGAAGTTTCCAAAGCCTAAAGTGATTCAAGTGAACAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATCATTGCTGGTGTAAATCCAGCCTTAATTCGCTGTCTTCATCGACCAGAGCAGTTTCCTCCAAAAAGTAACCTTGACAGTGGATCCTATGGTGATCATACTAGCACAATAACCAAAGAACACATAGAGCCTAACTTAGACGGGCTCACAGTAGAAGAGGCTATTGAGAAAAAGAAATTGTTCCTACTGGATGACCATGATGCAATAATGCCATATTTAAGGAAAATAAACTCCACAAGCTCAAAGGCGTACGCTACGAGAACCATCCTTTTCTTGAAGGATGATGGAACTTTGAGGCCACTAGCCATTGAGTTAAGTTTGCCAAATCCTCGAGGAGATCATTTTGGTGCTGTTAGCAATGTCTACCTGCCTGCAACAGAAGGTGTTCAAAGTTACATTTGGCTACTAGCCAGAGCCTATGCGGTCGTAAACGATTCGAACTATCATCAGCTAATCAGCCACTGGTTGAATACTCATGCAGCTGTTGAGCCATTTCTGATAGCAACCAACAGGCAGCTCAGTGTGCTTCATCCTATTTACAAACTTCTAGTTCCTCACTATCGTAATACCATGAATATCAATGCCAATGCACGAATAAGGCTGATCAGTGCAAATGGCATTATAGAACAGACATTCTTGGCAGGAGAGTATGCTATGGAATTGTCTTCTGCTATTTATAAGAACTGGGTTTTTACAGAGCAAGCTCTACCTTCTGATCTCATCAAGAGAGGAATGGCTGTTGAGGATGAAAATTCCCCTCATGGCATTCGCCTTGTGTTAGAGGACTACCCTTATGCAGCTGATGGACTTGAAATTTGGGGTGCTATTAGTACATGGGTCCAAGACTATGTTACCTTATACTACGTCTCAGATGATGCAGTTAAGGAAGACTCTGAACTCCAGTCTTGGTGGAAAGAAGTTGTGGAGGTGGGTCATGGTGACAAGAAAGGTGAGCCATGGTGGCCTAAAATGCAAACTCGCAAAGACTTGATTCAAACTTGCACCATTGTCATATGGACTGCTTCAGCACTTCATGCATCTGTTAATTTTGGACAATATCCATATGGAGGTATCATCTTGAATCGCCCTACTATTAGCAGGCGATTCATGCCCGAGGAAGGAACTGAAGAGTATGAGGAGCTGAAAAATGACCCTGAGAAGGCTTACTTGAGAACAATTACACAAAAGCCTCACACTCTTATTAATATTTCAACTATAGAACTTTTGTCAACCCATGTTTCTGATGAGTTCTACCTTGGACAAAGAGATGGGGCTGAGCATTGGACTTCTGATACAATCGCTCTACAAGCCTTTAACAAGTTTGGGAAAAGGCTAGCAGAAATTGAGGAACAGCTCATAAAGAAGAATAAGGATGTGAATTTGAAAAATAGGTATGGACCAGTTAGTATGCCTTACACTTTGCTCTATCCAACAACTGAGCCAGGAATGACTTTCAGGGGAATCCCCAACAGTGTCTCTATCTAA 2529 0.4247 MSLNILSGHKIKGTVVLVQKNVPGGATDVPHTSFLGQSVSFRLISATKADNSTGKGIVGNAAYLDGVINNLPTLAPGQSAFNIYFDHDSNFGIPGAFYINNFITTEFYLVSLTLEGVPHQGSLHFHCNSWIYNANKYQTDRIFFVNNTYRPGKTPAPLVYYREEELKTLRGDGTGERQEWERIYDYDFYNDLADPDTNDSLARPVLGGSTTYPYPRRGRTGRPPTKKDPNTESRSPIFYIPRDELLGFVQSPDFFAYGLKSISEVELPALESAFARNLSPHEFHSFEDVHDLFEEGIKLPLDVISQISHEPVLEKLVTTDGQQMKFPKPKVIQVNKSAWMTDEEFAREIIAGVNPALIRCLHRPEQFPPKSNLDSGSYGDHTSTITKEHIEPNLDGLTVEEAIEKKKLFLLDDHDAIMPYLRKINSTSSKAYATRTILFLKDDGTLRPLAIELSLPNPRGDHFGAVSNVYLPATEGVQSYIWLLARAYAVVNDSNYHQLISHWLNTHAAVEPFLIATNRQLSVLHPIYKLLVPHYRNTMNINANARIRLISANGIIEQTFLAGEYAMELSSAIYKNWVFTEQALPSDLIKRGMAVEDENSPHGIRLVLEDYPYAADGLEIWGAISTWVQDYVTLYYVSDDAVKEDSELQSWWKEVVEVGHGDKKGEPWWPKMQTRKDLIQTCTIVIWTASALHASVNFGQYPYGGIILNRPTISRRFMPEEGTEEYEELKNDPEKAYLRTITQKPHTLINISTIELLSTHVSDEFYLGQRDGAEHWTSDTIALQAFNKFGKRLAEIEEQLIKKNKDVNLKNRYGPVSMPYTLLYPTTEPGMTFRGIPNSVSI* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1537 842 ProSitePatterns Lipoxygenases iron-binding region signature 1. 497 511 IPR020833 GO:0016702|GO:0046872
Lja3g1537 842 PRINTS Plant lipoxygenase signature 180 196 IPR001246 GO:0016491
Lja3g1537 842 PRINTS Plant lipoxygenase signature 213 232 IPR001246 GO:0016491
Lja3g1537 842 PRINTS Plant lipoxygenase signature 141 162 IPR001246 GO:0016491
Lja3g1537 842 PRINTS Plant lipoxygenase signature 432 456 IPR001246 GO:0016491
Lja3g1537 842 PRINTS Plant lipoxygenase signature 280 301 IPR001246 GO:0016491
Lja3g1537 842 PRINTS Plant lipoxygenase signature 754 768 IPR001246 GO:0016491
Lja3g1537 842 PRINTS Plant lipoxygenase signature 366 385 IPR001246 GO:0016491
Lja3g1537 842 PRINTS Plant lipoxygenase signature 115 133 IPR001246 GO:0016491
Lja3g1537 842 PRINTS Lipoxygenase signature 497 514 IPR013819 GO:0016702|GO:0046872
Lja3g1537 842 PRINTS Lipoxygenase signature 479 496 IPR013819 GO:0016702|GO:0046872
Lja3g1537 842 PRINTS Lipoxygenase signature 517 537 IPR013819 GO:0016702|GO:0046872
Lja3g1537 842 SUPERFAMILY Lipoxigenase 151 842 IPR036226 -
Lja3g1537 842 ProSitePatterns Lipoxygenases iron-binding region signature 2. 524 534 IPR020834 GO:0016702|GO:0046872
Lja3g1537 842 Pfam PLAT/LH2 domain 46 144 IPR001024 GO:0005515
Lja3g1537 842 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 148 842 IPR013819 GO:0016702|GO:0046872
Lja3g1537 842 Gene3D - 475 841 - -
Lja3g1537 842 PANTHER LIPOXYGENASE 25 842 IPR000907 GO:0016702|GO:0046872
Lja3g1537 842 Gene3D - 338 474 - -
Lja3g1537 842 MobiDBLite consensus disorder prediction 199 235 - -
Lja3g1537 842 SMART LH2_4 9 146 IPR001024 GO:0005515
Lja3g1537 842 Gene3D - 150 249 - -
Lja3g1537 842 ProSiteProfiles PLAT domain profile. 16 145 IPR001024 GO:0005515
Lja3g1537 842 Gene3D - 250 337 IPR027433 -
Lja3g1537 842 Pfam Lipoxygenase 158 825 IPR013819 GO:0016702|GO:0046872
Lja3g1537 842 CDD PLAT_LH2 9 146 IPR042057 -
Lja3g1537 842 Gene3D PLAT/LH2 domain 4 149 - -
Lja3g1537 842 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 25 842 - -
Lja3g1537 842 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 149 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1537 Lja-Chr3 16646842 16652210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1537 4 842 Acyl Lipid Metabolism Gene Families AT1G55020 57.760 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1537 K15718 - gmx:547869 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1537 3 16646842 16652210 Lja3g5008 3 92241630 92246627 PCT